Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01004026.1 Kokia drynarioides strain JFW-HI SEQ_117153, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1840
ACGTcount: A:0.34, C:0.14, G:0.17, T:0.35


Found at i:1262 original size:11 final size:11

Alignment explanation


    Indices: 1246--1276  Score: 53
    Period size: 11  Copynumber: 2.8  Consensus size: 11

       1236 TTGTGTTAAT

                   *   
       1246 GAAGAGATGGG
          1 GAAGAGAAGGG

                       
       1257 GAAGAGAAGGG
          1 GAAGAGAAGGG

                     
       1268 GAAGAGAAG
          1 GAAGAGAAG

       1277 TGAACATCGA


Statistics
Matches: 19,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  11   19  1.00

ACGTcount: A:0.45, C:0.00, G:0.52, T:0.03


Consensus pattern (11 bp):   
GAAGAGAAGGG
Done.