Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01004031.1 Kokia drynarioides strain JFW-HI SEQ_117164, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2748
ACGTcount: A:0.29, C:0.16, G:0.21, T:0.34


Found at i:1810 original size:39 final size:38

Alignment explanation


    Indices: 1695--1860  Score: 131
    Period size: 39  Copynumber: 4.3  Consensus size: 38

       1685 TGTGACAATA

                     *    * *              *        
       1695 TAAACACTAAAATGCTGTACTG-AATCGGTAGTGACACTG
          1 TAAACACTACAATGTTATACTGAAAT-GG-AATGACACTG

                       *                 *          
       1734 TAAACACTACATTGTTATAC-GAAAATGACAATGACACTG
          1 TAAACACTACAATGTTATACTG-AAATG-GAATGACACTG

                                    *       *      
       1773 TAAACACTACAATGTTATACTGAACTGGAGATCACACTG
          1 TAAACACTACAATGTTATACTGAAATGGA-ATGACACTG

            *        *     *         *              
       1812 GAAACA-TCGCAATGCTATACTGAAGTGGTAATGACACTG
          1 TAAACACT-ACAATGTTATACTGAAATGG-AATGACACTG

              *       
       1851 TAGACACTAC
          1 TAAACACTAC

       1861 CAGGTTATCA


Statistics
Matches: 101,  Mismatches: 18, Indels: 16
        0.75            0.13        0.12

Matches are distributed among these distances:
  38    3  0.03
  39   92  0.91
  40    6  0.06

ACGTcount: A:0.39, C:0.19, G:0.17, T:0.25


Consensus pattern (38 bp):   
TAAACACTACAATGTTATACTGAAATGGAATGACACTG
Done.