Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01004037.1 Kokia drynarioides strain JFW-HI SEQ_117175, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1712
ACGTcount: A:0.38, C:0.18, G:0.21, T:0.23


Found at i:1306 original size:22 final size:21

Alignment explanation


    Indices: 1265--1307  Score: 59
    Period size: 22  Copynumber: 2.0  Consensus size: 21

       1255 CCTAGACAAA

                           *     
       1265 TAGAGGAAAAATTCATGCGAT
          1 TAGAGGAAAAATTCACGCGAT

                          *       
       1286 TAGAGGAGAAAATTGACGCGAT
          1 TAGAGGA-AAAATTCACGCGAT

       1308 GCAAGGAATT


Statistics
Matches: 19,  Mismatches: 2, Indels: 1
        0.86            0.09        0.05

Matches are distributed among these distances:
  21    7  0.37
  22   12  0.63

ACGTcount: A:0.42, C:0.09, G:0.28, T:0.21


Consensus pattern (21 bp):   
TAGAGGAAAAATTCACGCGAT
Done.