Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01004042.1 Kokia drynarioides strain JFW-HI SEQ_117183, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4743
ACGTcount: A:0.33, C:0.18, G:0.17, T:0.32


Found at i:1409 original size:12 final size:12

Alignment explanation


    Indices: 1388--1419  Score: 55
    Period size: 12  Copynumber: 2.7  Consensus size: 12

       1378 GTCTTTGTTA

                        
       1388 TCATCATCATCG
          1 TCATCATCATCG

                 *      
       1400 TCATCGTCATCG
          1 TCATCATCATCG

                    
       1412 TCATCATC
          1 TCATCATC

       1420 TGCATCTGTT


Statistics
Matches: 18,  Mismatches: 2, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  12   18  1.00

ACGTcount: A:0.22, C:0.34, G:0.09, T:0.34


Consensus pattern (12 bp):   
TCATCATCATCG
Done.