Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01004047.1 Kokia drynarioides strain JFW-HI SEQ_117193, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 621

Length: 1036
ACGTcount: A:0.28, C:0.19, G:0.14, T:0.39


Found at i:385 original size:216 final size:216

Alignment explanation


    Indices: 4--1035  Score: 1162
    Period size: 216  Copynumber: 4.8  Consensus size: 216

          1 CCA

                                       *       *    *            * *   *     
          4 AACTTGACAAACTTTTACGAGTTCTTCAATAACTTTGGTTTC-TCAAAGTATTTAGGACAATCCA
          1 AACTTGACAAACTTTTACGAGTTCTTCTATAACTTCGGTTCCAT-AAAGTATTCATGACGATCCA

                  *                    *                        *         *  
         68 TTCCTTAGAGCAATTTGT-TGAACATTTCATGCTTGGGAAATCGCATCATTTGGTCTAAATACTT
         65 TTCCTTCGAGCAATTT-TCTGAACATTCCATGCTTGGGAAATCGCATCATTTTGTCTAAATAGTT

                           *                 *                    *        * 
        132 TGTCATTTTCTAAACTACTTTTGGTCTTTGAATGAAAAACTTATTCACGTGAGAGTTGTTTCTAT
        129 TGTCATTTTCTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTCACGTGAGAATTGTTTCTCT

                 *    *         *  
        197 CTTGGTTCTTAGACGAACTTTCG
        194 CTTGGATCTTGGACGAACTTCCG

                  *                   *         *                     *      
        220 AACTTGGCAAACTTTTACGAGTTCTTTTATAACTTCAGTTCCATAAAGTATTCATGACCATCCAT
          1 AACTTGACAAACTTTTACGAGTTCTTCTATAACTTCGGTTCCATAAAGTATTCATGACGATCCAT

                                     *                         *             
        285 TCCTTCGAGCAATTTTCTGAACATTTCATGCTTGGGAAATCGCATCATTTTTTCTAAACTA-TTT
         66 TCCTTCGAGCAATTTTCTGAACATTCCATGCTTGGGAAATCGCATCATTTTGTCTAAA-TAGTTT

                   **                       *              *           *   * 
        349 GTCATTTGGTAAACAACTTTTGGTCTTTGAATGAAAAACTTATTCACATGAGAATTGTTCCTCCC
        130 GTCATTTTCTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTCACGTGAGAATTGTTTCTCTC

              *   *     *        *
        414 TTAGATATTGGATGAACTT-CT
        195 TTGGATCTTGGACGAACTTCCG

                            *          *           *  **                     
        435 ATACTTGACAAACTTTGACGAGTTCTTTTATAACTTCGGCTCTTTAAAGTATTCATGACGATCCA
          1 A-ACTTGACAAACTTTTACGAGTTCTTCTATAACTTCGGTTCCATAAAGTATTCATGACGATCCA

                                                      *         *            
        500 TTCCTTCGAGCAATTTTCTGAACATTCCATGCTTGGGAAATCACATCATTTTCTCTAAATAGTTT
         65 TTCCTTCGAGCAATTTTCTGAACATTCCATGCTTGGGAAATCGCATCATTTTGTCTAAATAGTTT

                   **  *             *                  *      *         *   
        565 GTCATTTGGTATACAACTTTTGGTCATTGAATTAAAAACTTATTTACGTGATAATT-TATTATCT
        130 GTCATTTTCTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTCACGTGAGAATTGT-TTCTCT

                    *               
        629 CTTGGATCATGGAC-AAGCTTCCG
        194 CTTGGATCTTGGACGAA-CTTCCG

                 *            *    *    *      *                            *
        652 AACTTTACAAACTTTTACCAGTTGTTCTCTAACTTTGGTT-CATTAAAGTATTCATGACGATCCT
          1 AACTTGACAAACTTTTACGAGTTCTTCTATAACTTCGGTTCCA-TAAAGTATTCATGACGATCCA

                      *       *          *  **   *  *         *  *     *     
        716 TTCCTTCGAGTAATTTTCCGAACATTCCAAGCACGGGGAACCGCATCATTCTGCCTAAACAGTTT
         65 TTCCTTCGAGCAATTTTCTGAACATTCCATGCTTGGGAAATCGCATCATTTTGTCTAAATAGTTT

            *                         * *         *     *        *           
        781 TTCATTTTCTAAACAACTTTTGGTCTATAAATTAAAAAGTTATTTACGTGAGAGTTGTTTCTCTC
        130 GTCATTTTCTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTCACGTGAGAATTGTTTCTCT-

                 *                 
        846 CTT-GTTCTTGGACGAACTTCCG
        194 CTTGGATCTTGGACGAACTTCCG

                    *  *                 *      *     * *                  * 
        868 AACTTGACGAAGTTTTACGAGTTCTTCTAAAACTTCAGTTCCTTTAAGTATTCATGACGATCCGT
          1 AACTTGACAAACTTTTACGAGTTCTTCTATAACTTCGGTTCCATAAAGTATTCATGACGATCCAT

                  *          *             **                          *    *
        933 TCCTTCTAGCAATTTTCAGAACATTCCATGCACGGGAAATCGCATCATTTTGTCTAAATTGTTTA
         66 TCCTTCGAGCAATTTTCTGAACATTCCATGCTTGGGAAATCGCATCATTTTGTCTAAATAGTTTG

                                **                
        998 TCATTTTCTAAACAACTTTTTATCTTTGAATTAAAAAC
        131 TCATTTTCTAAACAACTTTTGGTCTTTGAATTAAAAAC

       1036 C


Statistics
Matches: 689,  Mismatches: 114, Indels: 26
        0.83            0.14        0.03

Matches are distributed among these distances:
 215    8  0.01
 216  669  0.97
 217   12  0.02

ACGTcount: A:0.28, C:0.19, G:0.14, T:0.39


Consensus pattern (216 bp):   
AACTTGACAAACTTTTACGAGTTCTTCTATAACTTCGGTTCCATAAAGTATTCATGACGATCCAT
TCCTTCGAGCAATTTTCTGAACATTCCATGCTTGGGAAATCGCATCATTTTGTCTAAATAGTTTG
TCATTTTCTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTCACGTGAGAATTGTTTCTCTCT
TGGATCTTGGACGAACTTCCG

Done.