Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01004051.1 Kokia drynarioides strain JFW-HI SEQ_117198, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 10667
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.35


Found at i:4710 original size:26 final size:26

Alignment explanation


    Indices: 4681--4734  Score: 72
    Period size: 26  Copynumber: 2.1  Consensus size: 26

       4671 TTAGATAACA

                     **         *     
       4681 TTGAATTTTGGAATATTTTTTATTTT
          1 TTGAATTTTAAAATATTTTTAATTTT

                          *           
       4707 TTGAATTTTAAAATGTTTTTAATTTT
          1 TTGAATTTTAAAATATTTTTAATTTT

              
       4733 TT
          1 TT

       4735 TCATAATTTT


Statistics
Matches: 24,  Mismatches: 4, Indels: 0
        0.86            0.14        0.00

Matches are distributed among these distances:
  26   24  1.00

ACGTcount: A:0.26, C:0.00, G:0.09, T:0.65


Consensus pattern (26 bp):   
TTGAATTTTAAAATATTTTTAATTTT

Found at i:5903 original size:2 final size:2

Alignment explanation


    Indices: 5896--5921  Score: 52
    Period size: 2  Copynumber: 13.0  Consensus size: 2

       5886 AGAAGGGATT

                                                  
       5896 AG AG AG AG AG AG AG AG AG AG AG AG AG
          1 AG AG AG AG AG AG AG AG AG AG AG AG AG

       5922 TGGCAGTTCT


Statistics
Matches: 24,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   24  1.00

ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00


Consensus pattern (2 bp):   
AG

Done.