Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01004060.1 Kokia drynarioides strain JFW-HI SEQ_117213, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 819

Length: 1366
ACGTcount: A:0.24, C:0.20, G:0.20, T:0.36


Found at i:697 original size:140 final size:139

Alignment explanation


    Indices: 412--805  Score: 698
    Period size: 140  Copynumber: 2.8  Consensus size: 139

        402 TCAATTGGCT

                    *              *                                         
        412 TATCTCATTAGGAAGACGAATTTGGTTCACTTCTCAGTACCTCATCTGGAAGATTTGCTCGTTTC
          1 TATCTCATCAGGAAGACGAATTTAGTTCACTTCTCAGTACCTCATCTGGAAGATTTGCTCGTTTC

                       *                                                     
        477 GAGCCTCATTTAGGTCTTCTTCTCAGTGTCTCATCAGGAAGATGATCCCATCACTGTTTCAATCC
         66 GAGCCTCATTTGGGTCTTCTTCTCAGTGTCTCATCAGGAAGATGATCCCATCACTGTTTCAATCC

                     
        542 GCTTCTCTG
        131 GCTTCTCTG

                            *               *                                
        551 TATCTCATCAGGAAGATGAATTTAGTTCACTTATCAGTACCTCATCTGGAAGATTTGCTCGTTTC
          1 TATCTCATCAGGAAGACGAATTTAGTTCACTTCTCAGTACCTCATCTGGAAGATTTGCTCGTTTC

                    *                 **                                     
        616 GAGCCTCGTTTTGGGTCTTCTTCTCAACGTCTCATCAGGAAGATGATCCCATCACTGTTTCAATC
         66 GAGCCTC-ATTTGGGTCTTCTTCTCAGTGTCTCATCAGGAAGATGATCCCATCACTGTTTCAATC

                      
        681 CGCTTCTCTG
        130 CGCTTCTCTG

                             *                                               
        691 TATCTCATCAGGAAGACAAATTTAGTTCACTTCTCAGTACCTCATCTGGAAGATTTGCTCGTTTC
          1 TATCTCATCAGGAAGACGAATTTAGTTCACTTCTCAGTACCTCATCTGGAAGATTTGCTCGTTTC

                                                              
        756 GAGCCTCATTTGGGTCTTCTTCTCAGTGTCTCATCAGGAAGATGATCCCA
         66 GAGCCTCATTTGGGTCTTCTTCTCAGTGTCTCATCAGGAAGATGATCCCA

        806 CTGTTTTGTG


Statistics
Matches: 240,  Mismatches: 14, Indels: 2
        0.94            0.05        0.01

Matches are distributed among these distances:
 139  108  0.45
 140  132  0.55

ACGTcount: A:0.22, C:0.25, G:0.18, T:0.35


Consensus pattern (139 bp):   
TATCTCATCAGGAAGACGAATTTAGTTCACTTCTCAGTACCTCATCTGGAAGATTTGCTCGTTTC
GAGCCTCATTTGGGTCTTCTTCTCAGTGTCTCATCAGGAAGATGATCCCATCACTGTTTCAATCC
GCTTCTCTG
Done.