Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01004062.1 Kokia drynarioides strain JFW-HI SEQ_117215, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7607
ACGTcount: A:0.34, C:0.20, G:0.16, T:0.30


Found at i:4723 original size:38 final size:37

Alignment explanation


    Indices: 4641--4731  Score: 94
    Period size: 38  Copynumber: 2.4  Consensus size: 37

       4631 TTCTGGGCAT

                     *               *           
       4641 ACTCATGCAATGACAATTTTGGACGTAATTCTGGAAA
          1 ACTCATGCAGTGACAATTTTGGACGCAATTCTGGAAA

            *                      **              
       4678 TCGTCATGCAGTGACAATTTTGGTTGCAATTCT-GAACA
          1 AC-TCATGCAGTGACAATTTTGGACGCAATTCTGGAA-A

                       *    
       4716 GACTCATGCAGCGACA
          1 -ACTCATGCAGTGACA

       4732 TTAGAAGTAA


Statistics
Matches: 44,  Mismatches: 7, Indels: 5
        0.79            0.12        0.09

Matches are distributed among these distances:
  37    4  0.09
  38   39  0.89
  39    1  0.02

ACGTcount: A:0.31, C:0.20, G:0.21, T:0.29


Consensus pattern (37 bp):   
ACTCATGCAGTGACAATTTTGGACGCAATTCTGGAAA
Done.