Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01004068.1 Kokia drynarioides strain JFW-HI SEQ_117226, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 845

Length: 1409
ACGTcount: A:0.33, C:0.20, G:0.10, T:0.36


Found at i:535 original size:23 final size:23

Alignment explanation


    Indices: 420--541  Score: 117
    Period size: 23  Copynumber: 5.3  Consensus size: 23

        410 GCTGGGGAAA

                                   
        420 CAGTAAGCACACACAGTGC-AAT
          1 CAGTAAGCACACACAGTGCGAAT

                        *           
        442 CTAGTAAGCACATACAGTGC-AAT
          1 C-AGTAAGCACACACAGTGCGAAT

                 *  *    *  *  *   
        465 CAGTAGGCGCACATAGCGCAAAT
          1 CAGTAAGCACACACAGTGCGAAT

                 *                 *
        488 CAGTAGGCACACGA-AGTGCGAAA
          1 CAGTAAGCACAC-ACAGTGCGAAT

                                    
        511 CAGTAAGCACACACAGTGCTGAA-
          1 CAGTAAGCACACACAGTGC-GAAT

                    
        534 CAGTAAGC
          1 CAGTAAGC

        542 GCGCTAGCGT


Statistics
Matches: 84,  Mismatches: 11, Indels: 9
        0.81            0.11        0.09

Matches are distributed among these distances:
  22   15  0.18
  23   65  0.77
  24    4  0.05

ACGTcount: A:0.39, C:0.25, G:0.23, T:0.14


Consensus pattern (23 bp):   
CAGTAAGCACACACAGTGCGAAT
Done.