Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01004080.1 Kokia drynarioides strain JFW-HI SEQ_117248, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 21735
ACGTcount: A:0.31, C:0.20, G:0.16, T:0.33


Found at i:887 original size:47 final size:47

Alignment explanation


    Indices: 796--887  Score: 123
    Period size: 47  Copynumber: 2.0  Consensus size: 47

        786 AATACACGCA

                 *                      *        *         
        796 TTAGATATTAGAATTTCTAACATTTTCGGAGAATTTTGTATTTACAT
          1 TTAGAGATTAGAATTTCTAACATTTTCGAAGAATTTTATATTTACAT

                                       *            *     
        843 TTAGAGATTAGAA-TTCTTAACATTTTTGAAGAATTTTATGTTTAC
          1 TTAGAGATTAGAATTTC-TAACATTTTCGAAGAATTTTATATTTAC

        888 GTTTTGAAAG


Statistics
Matches: 39,  Mismatches: 5, Indels: 2
        0.85            0.11        0.04

Matches are distributed among these distances:
  46    3  0.08
  47   36  0.92

ACGTcount: A:0.33, C:0.08, G:0.13, T:0.47


Consensus pattern (47 bp):   
TTAGAGATTAGAATTTCTAACATTTTCGAAGAATTTTATATTTACAT
Done.