Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01004082.1 Kokia drynarioides strain JFW-HI SEQ_117250, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 959

Length: 1599
ACGTcount: A:0.36, C:0.15, G:0.14, T:0.35


Found at i:834 original size:20 final size:21

Alignment explanation


    Indices: 811--849  Score: 53
    Period size: 21  Copynumber: 1.9  Consensus size: 21

        801 TAAATTTAAC

                                 
        811 TTTAACC-TAAAATATTTATT
          1 TTTAACCGTAAAATATTTATT

                *       *      
        831 TTTACCCGTAAATTATTTA
          1 TTTAACCGTAAAATATTTA

        850 AAACCATAAA


Statistics
Matches: 16,  Mismatches: 2, Indels: 1
        0.84            0.11        0.05

Matches are distributed among these distances:
  20    6  0.38
  21   10  0.62

ACGTcount: A:0.36, C:0.13, G:0.03, T:0.49


Consensus pattern (21 bp):   
TTTAACCGTAAAATATTTATT
Done.