Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01004083.1 Kokia drynarioides strain JFW-HI SEQ_117251, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 970

Length: 1618
ACGTcount: A:0.32, C:0.16, G:0.17, T:0.36


Found at i:280 original size:21 final size:21

Alignment explanation


    Indices: 239--280  Score: 57
    Period size: 21  Copynumber: 2.0  Consensus size: 21

        229 GAGCTTTGAA

                        *   *    
        239 TTTTGTTCTCCATCATGCTTC
          1 TTTTGTTCTCCAGCATCCTTC

                      *          
        260 TTTTGTTCTCGAGCATCCTTC
          1 TTTTGTTCTCCAGCATCCTTC

        281 CCAACTTCTT


Statistics
Matches: 18,  Mismatches: 3, Indels: 0
        0.86            0.14        0.00

Matches are distributed among these distances:
  21   18  1.00

ACGTcount: A:0.10, C:0.29, G:0.12, T:0.50


Consensus pattern (21 bp):   
TTTTGTTCTCCAGCATCCTTC
Done.