Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01004084.1 Kokia drynarioides strain JFW-HI SEQ_117252, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7458
ACGTcount: A:0.36, C:0.17, G:0.14, T:0.33


Found at i:6839 original size:25 final size:25

Alignment explanation


    Indices: 6809--6857  Score: 89
    Period size: 25  Copynumber: 2.0  Consensus size: 25

       6799 ACTGCTTCCA

                         *           
       6809 AAATAAATAATTTCTTTTTTCCAAT
          1 AAATAAATAATTTATTTTTTCCAAT

                                    
       6834 AAATAAATAATTTATTTTTTCCAA
          1 AAATAAATAATTTATTTTTTCCAA

       6858 ATGACTTAGA


Statistics
Matches: 23,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  25   23  1.00

ACGTcount: A:0.43, C:0.10, G:0.00, T:0.47


Consensus pattern (25 bp):   
AAATAAATAATTTATTTTTTCCAAT
Done.