Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01004092.1 Kokia drynarioides strain JFW-HI SEQ_117263, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4359
ACGTcount: A:0.33, C:0.18, G:0.17, T:0.33


Found at i:3217 original size:12 final size:12

Alignment explanation


    Indices: 3200--3230  Score: 53
    Period size: 12  Copynumber: 2.6  Consensus size: 12

       3190 AATTAAATAA

                        
       3200 ATAATAGCATTC
          1 ATAATAGCATTC

                        
       3212 ATAATAGCATTC
          1 ATAATAGCATTC

              *    
       3224 ATCATAG
          1 ATAATAG

       3231 TAATAAACAA


Statistics
Matches: 18,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  12   18  1.00

ACGTcount: A:0.42, C:0.16, G:0.10, T:0.32


Consensus pattern (12 bp):   
ATAATAGCATTC
Done.