Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01004093.1 Kokia drynarioides strain JFW-HI SEQ_117264, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 10258
ACGTcount: A:0.37, C:0.14, G:0.14, T:0.35


Found at i:9877 original size:18 final size:18

Alignment explanation


    Indices: 9854--9902  Score: 64
    Period size: 17  Copynumber: 2.7  Consensus size: 18

       9844 CCCCAAATTT

                     *        
       9854 TTTTAAATTTTTTTTTAA
          1 TTTTAAATTATTTTTTAA

                              
       9872 TTTT-AATTATTTTTTAA
          1 TTTTAAATTATTTTTTAA

            *             
       9889 GTTTAAATTCATTT
          1 TTTTAAATT-ATTT

       9903 GCTGATGTGG


Statistics
Matches: 27,  Mismatches: 2, Indels: 3
        0.84            0.06        0.09

Matches are distributed among these distances:
  17   15  0.56
  18    8  0.30
  19    4  0.15

ACGTcount: A:0.29, C:0.02, G:0.02, T:0.67


Consensus pattern (18 bp):   
TTTTAAATTATTTTTTAA

Done.