Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01004094.1 Kokia drynarioides strain JFW-HI SEQ_117265, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3725
ACGTcount: A:0.28, C:0.19, G:0.17, T:0.35


Found at i:558 original size:28 final size:28

Alignment explanation


    Indices: 526--581  Score: 94
    Period size: 28  Copynumber: 2.0  Consensus size: 28

        516 ACTTCAGGGC

                      *                 
        526 ATAAGATTCGTCTTTGTGGTCTCAATCT
          1 ATAAGATTCGCCTTTGTGGTCTCAATCT

                    *                   
        554 ATAAGATTTGCCTTTGTGGTCTCAATCT
          1 ATAAGATTCGCCTTTGTGGTCTCAATCT

        582 TTCCCTTTAT


Statistics
Matches: 26,  Mismatches: 2, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  28   26  1.00

ACGTcount: A:0.21, C:0.18, G:0.18, T:0.43


Consensus pattern (28 bp):   
ATAAGATTCGCCTTTGTGGTCTCAATCT

Found at i:2604 original size:45 final size:45

Alignment explanation


    Indices: 2540--2629  Score: 180
    Period size: 45  Copynumber: 2.0  Consensus size: 45

       2530 TCCTCTCAAT

                                                         
       2540 GTCATTTTTTCATTTTTAGAAGCTTGCTTAGGTACTTGCGATCTC
          1 GTCATTTTTTCATTTTTAGAAGCTTGCTTAGGTACTTGCGATCTC

                                                         
       2585 GTCATTTTTTCATTTTTAGAAGCTTGCTTAGGTACTTGCGATCTC
          1 GTCATTTTTTCATTTTTAGAAGCTTGCTTAGGTACTTGCGATCTC

       2630 TTACATACTG


Statistics
Matches: 45,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  45   45  1.00

ACGTcount: A:0.18, C:0.18, G:0.18, T:0.47


Consensus pattern (45 bp):   
GTCATTTTTTCATTTTTAGAAGCTTGCTTAGGTACTTGCGATCTC
Done.