Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01004099.1 Kokia drynarioides strain JFW-HI SEQ_117271, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1746
ACGTcount: A:0.35, C:0.18, G:0.20, T:0.27


Found at i:190 original size:21 final size:21

Alignment explanation


    Indices: 158--204  Score: 51
    Period size: 21  Copynumber: 2.2  Consensus size: 21

        148 TTCAAAAAAA

                             * * 
        158 GTCAACGATCAACTGTCGATG
          1 GTCAACGATCAACTGTCAACG

                         *        
        179 GTCAAC-AGTCAATTGTCAACG
          1 GTCAACGA-TCAACTGTCAACG

                 
        200 GTCAA
          1 GTCAA

        205 TGGACAACGG


Statistics
Matches: 22,  Mismatches: 3, Indels: 2
        0.81            0.11        0.07

Matches are distributed among these distances:
  20    1  0.05
  21   21  0.95

ACGTcount: A:0.32, C:0.23, G:0.21, T:0.23


Consensus pattern (21 bp):   
GTCAACGATCAACTGTCAACG

Found at i:212 original size:14 final size:14

Alignment explanation


    Indices: 166--216  Score: 57
    Period size: 14  Copynumber: 3.6  Consensus size: 14

        156 AAGTCAACGA

                 *   *    
        166 TCAACTGTCGATGG
          1 TCAACGGTCAATGG

                 *      * 
        180 TCAACAGTCAATTG
          1 TCAACGGTCAATGG

                          
        194 TCAACGGTCAATGG
          1 TCAACGGTCAATGG

            *        
        208 ACAACGGTC
          1 TCAACGGTC

        217 GGGTCAAATC


Statistics
Matches: 31,  Mismatches: 6, Indels: 0
        0.84            0.16        0.00

Matches are distributed among these distances:
  14   31  1.00

ACGTcount: A:0.29, C:0.24, G:0.24, T:0.24


Consensus pattern (14 bp):   
TCAACGGTCAATGG
Done.