Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01004103.1 Kokia drynarioides strain JFW-HI SEQ_117276, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2450
ACGTcount: A:0.31, C:0.21, G:0.12, T:0.36


Found at i:100 original size:20 final size:17

Alignment explanation


    Indices: 71--115  Score: 56
    Period size: 20  Copynumber: 2.5  Consensus size: 17

         61 AAAAGGCTGA

                               
         71 TTTC-CTTCTCTTTTACTC
          1 TTTCTCTTCTCTTTT-C-C

                              
         89 TTTGCTCTTCTCTTTTCC
          1 TTT-CTCTTCTCTTTTCC

                     
        107 TTTCTCTTC
          1 TTTCTCTTC

        116 AATTTGATCC


Statistics
Matches: 25,  Mismatches: 0, Indels: 5
        0.83            0.00        0.17

Matches are distributed among these distances:
  17    6  0.24
  18    7  0.28
  19    2  0.08
  20   10  0.40

ACGTcount: A:0.02, C:0.33, G:0.02, T:0.62


Consensus pattern (17 bp):   
TTTCTCTTCTCTTTTCC
Done.