Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01004104.1 Kokia drynarioides strain JFW-HI SEQ_117277, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 727

Length: 1212
ACGTcount: A:0.38, C:0.10, G:0.15, T:0.37


Found at i:574 original size:23 final size:23

Alignment explanation


    Indices: 529--575  Score: 60
    Period size: 23  Copynumber: 2.0  Consensus size: 23

        519 TTATATGTTC

                           *  *    
        529 ATGAACATGTTCGATTAAGTTAA
          1 ATGAACATGTTCGATGAAATTAA

                                    
        552 ATGAACATGTTCG-TGAACATTAA
          1 ATGAACATGTTCGATGAA-ATTAA

             
        575 A
          1 A

        576 CAAACGAACA


Statistics
Matches: 21,  Mismatches: 2, Indels: 2
        0.84            0.08        0.08

Matches are distributed among these distances:
  22    3  0.14
  23   18  0.86

ACGTcount: A:0.40, C:0.11, G:0.17, T:0.32


Consensus pattern (23 bp):   
ATGAACATGTTCGATGAAATTAA
Done.