Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01000411.1 Kokia drynarioides strain JFW-HI SEQ_111229, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3528
ACGTcount: A:0.38, C:0.12, G:0.13, T:0.38


Found at i:754 original size:16 final size:16

Alignment explanation


    Indices: 728--766  Score: 55
    Period size: 16  Copynumber: 2.5  Consensus size: 16

        718 ATGAATTCAA

                            
        728 ATAATTTTAAAT-TTT
          1 ATAATTTTAAATATTT

                             
        743 ATAATTTATAAATATTT
          1 ATAATTT-TAAATATTT

                    
        760 -TAATTTT
          1 ATAATTTT

        767 GATGTAATAA


Statistics
Matches: 22,  Mismatches: 0, Indels: 4
        0.85            0.00        0.15

Matches are distributed among these distances:
  15    8  0.36
  16   11  0.50
  17    3  0.14

ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59


Consensus pattern (16 bp):   
ATAATTTTAAATATTT
Done.