Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01004113.1 Kokia drynarioides strain JFW-HI SEQ_117295, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3401
ACGTcount: A:0.30, C:0.19, G:0.18, T:0.33


Found at i:702 original size:18 final size:18

Alignment explanation


    Indices: 681--720  Score: 53
    Period size: 18  Copynumber: 2.2  Consensus size: 18

        671 TTGTATGACT

                     **       
        681 GCATCTGATTTTGTGATC
          1 GCATCTGATCATGTGATC

                   *          
        699 GCATCTGGTCATGTGATC
          1 GCATCTGATCATGTGATC

                
        717 GCAT
          1 GCAT

        721 TTGGTCCGGT


Statistics
Matches: 19,  Mismatches: 3, Indels: 0
        0.86            0.14        0.00

Matches are distributed among these distances:
  18   19  1.00

ACGTcount: A:0.17, C:0.20, G:0.25, T:0.38


Consensus pattern (18 bp):   
GCATCTGATCATGTGATC

Found at i:725 original size:18 final size:18

Alignment explanation


    Indices: 692--726  Score: 61
    Period size: 18  Copynumber: 1.9  Consensus size: 18

        682 CATCTGATTT

                              
        692 TGTGATCGCATCTGGTCA
          1 TGTGATCGCATCTGGTCA

                       *     
        710 TGTGATCGCATTTGGTC
          1 TGTGATCGCATCTGGTC

        727 CGGTTGCGCA


Statistics
Matches: 16,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  18   16  1.00

ACGTcount: A:0.14, C:0.20, G:0.29, T:0.37


Consensus pattern (18 bp):   
TGTGATCGCATCTGGTCA
Done.