genome.fa.s4115.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01004115.1 Kokia drynarioides strain JFW-HI SEQ_117300, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33188

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15--49	18	1.9	18	88	0	52	40	5	22	31	1.78
1395--1429	7	4.7	7	86	13	52	42	0	0	57	0.99
1546--1578	12	2.8	12	100	0	66	45	42	6	6	1.53
1545--1585	12	3.4	12	89	0	55	48	36	4	9	1.58
3128--3319	59	3.2	57	86	7	240	37	25	1	35	1.66
3129--3319	89	2.1	88	83	7	226	37	25	1	35	1.66
3148--3348	59	3.4	57	82	10	226	36	24	2	36	1.69
3146--3349	89	2.3	90	81	8	222	35	25	2	36	1.69
3129--3348	30	7.4	30	82	7	213	36	25	2	35	1.70
3347--3465	29	4.2	28	79	10	116	33	26	4	35	1.76
3443--3555	30	3.8	30	72	8	88	40	21	0	37	1.59
3508--3565	31	1.9	29	86	6	80	39	25	0	34	1.56
15727--15861	39	3.5	39	71	11	132	24	32	17	25	1.97
15733--16141	78	5.2	78	82	5	439	25	29	18	26	1.98
15763--16141	160	2.4	155	82	6	456	25	29	18	26	1.98
15764--16141	39	9.6	39	67	10	149	25	29	18	26	1.98
16130--16167	6	6.3	6	100	0	76	15	36	31	15	1.90
16167--16367	78	2.6	77	83	1	240	25	30	20	22	1.98
16204--16327	39	3.2	39	68	4	106	22	28	25	24	2.00
16228--16366	39	3.6	39	73	1	127	24	30	23	21	1.99
16908--16953	17	2.7	17	86	0	65	39	2	4	54	1.32
18572--18795	60	3.7	60	83	5	249	37	25	1	34	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18588--18812	30	7.6	30	78	8	203	36	26	2	34	1.69
18610--18795	59	3.1	59	87	2	221	37	25	1	35	1.66
18822--19031	29	7.3	29	79	6	196	33	29	5	31	1.81
18889--19029	58	2.4	58	95	1	248	33	31	4	30	1.79
18926--19065	29	4.9	28	75	11	115	35	28	2	33	1.72
28584--28630	18	2.6	18	78	18	53	23	19	19	38	1.93
31404--31443	20	2.0	21	85	5	55	47	15	15	22	1.82

Tables:   1

The End!