Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01004116.1 Kokia drynarioides strain JFW-HI SEQ_117301, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2706
ACGTcount: A:0.30, C:0.17, G:0.17, T:0.36


Found at i:2461 original size:20 final size:21

Alignment explanation


    Indices: 2438--2481  Score: 72
    Period size: 20  Copynumber: 2.1  Consensus size: 21

       2428 TTTCTAAGAC

                           *     
       2438 TTTTAGTTAATTTT-GAAATT
          1 TTTTAGTTAATTTTACAAATT

                                 
       2458 TTTTAGTTAATTTTACAAATT
          1 TTTTAGTTAATTTTACAAATT

               
       2479 TTT
          1 TTT

       2482 GTTGTAAAGT


Statistics
Matches: 22,  Mismatches: 1, Indels: 1
        0.92            0.04        0.04

Matches are distributed among these distances:
  20   14  0.64
  21    8  0.36

ACGTcount: A:0.30, C:0.02, G:0.07, T:0.61


Consensus pattern (21 bp):   
TTTTAGTTAATTTTACAAATT

Done.