Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01004118.1 Kokia drynarioides strain JFW-HI SEQ_117303, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 9114
ACGTcount: A:0.34, C:0.18, G:0.16, T:0.32


Found at i:1984 original size:12 final size:12

Alignment explanation


    Indices: 1967--2001  Score: 54
    Period size: 12  Copynumber: 3.0  Consensus size: 12

       1957 AAGTTTTTTC

                        
       1967 TATATATTTATT
          1 TATATATTTATT

                      * 
       1979 TATATATTTACT
          1 TATATATTTATT

                        
       1991 TAT-TATTTATT
          1 TATATATTTATT

       2002 ACATATTAAT


Statistics
Matches: 21,  Mismatches: 2, Indels: 1
        0.88            0.08        0.04

Matches are distributed among these distances:
  11    7  0.33
  12   14  0.67

ACGTcount: A:0.31, C:0.03, G:0.00, T:0.66


Consensus pattern (12 bp):   
TATATATTTATT
Done.