Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01004123.1 Kokia drynarioides strain JFW-HI SEQ_117312, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 973

Length: 1622
ACGTcount: A:0.35, C:0.17, G:0.17, T:0.31


Found at i:1547 original size:20 final size:20

Alignment explanation


    Indices: 1524--1568  Score: 56
    Period size: 20  Copynumber: 2.2  Consensus size: 20

       1514 TTTATAATTA

                                 
       1524 ATTATTATTT-TTAATAAAAT
          1 ATTATTATTTATTAA-AAAAT

                *        *      
       1544 ATTAATATTTATTTAAAAAT
          1 ATTATTATTTATTAAAAAAT

                 
       1564 ATTAT
          1 ATTAT

       1569 ACTATTTTTT


Statistics
Matches: 21,  Mismatches: 3, Indels: 2
        0.81            0.12        0.08

Matches are distributed among these distances:
  20   18  0.86
  21    3  0.14

ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53


Consensus pattern (20 bp):   
ATTATTATTTATTAAAAAAT
Done.