genome.fa.s4129.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01004129.1 Kokia drynarioides strain JFW-HI SEQ_117322, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  214019

Tables:   1   

This is table  1  of  1  ( 52 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7800--7824	2	12.5	2	100	0	50	48	0	0	52	1.00
14259--14283	13	1.9	13	100	0	50	56	0	4	40	1.18
19706--19796	23	4.0	23	85	2	121	16	29	16	37	1.91
19697--19846	70	2.1	68	78	9	151	15	29	14	40	1.87
19970--19999	15	2.0	15	93	0	51	43	0	26	30	1.55
22931--22959	1	29.0	1	100	0	58	0	0	0	100	0.00
25911--25959	6	7.7	6	86	13	71	46	0	53	0	1.00
27424--27820	198	2.0	198	98	0	776	40	17	17	25	1.90
30607--30653	15	2.8	18	79	20	50	65	2	0	31	1.04
34781--34836	24	2.3	25	78	9	62	25	17	35	21	1.95
34837--34890	24	2.3	23	81	9	63	18	24	38	18	1.93
36576--36621	24	1.9	24	86	8	67	17	32	34	15	1.91
37403--37449	14	3.2	14	77	17	51	34	0	0	65	0.93
37472--37505	18	1.9	17	88	5	50	55	8	2	32	1.45
39200--39598	218	1.8	219	93	1	701	25	16	17	41	1.89
41171--41197	2	13.5	2	100	0	54	51	0	0	48	1.00
42892--42932	19	2.2	19	86	8	57	43	0	0	56	0.99
48083--48131	12	4.1	12	76	10	55	30	14	16	38	1.88
53790--53876	12	7.3	12	78	2	95	8	3	19	68	1.29
53760--53805	20	2.3	20	80	0	65	6	2	21	69	1.22
53772--53876	35	3.0	34	76	6	102	8	3	18	69	1.29
60777--60807	2	15.0	2	93	6	53	48	3	0	48	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
86584--86647	33	1.9	33	96	0	119	17	3	29	50	1.61
86594--86651	19	3.3	19	65	22	54	18	3	27	50	1.63
86718--86761	22	2.0	22	90	0	70	47	2	20	29	1.62
86963--86993	12	2.6	12	100	0	62	22	16	19	41	1.89
96956--97000	21	2.1	21	83	0	54	44	2	2	51	1.26
97741--97770	16	1.9	16	93	6	53	43	10	0	46	1.37
122211--122352	9	15.2	9	66	20	51	58	2	4	34	1.31
125543--125596	16	3.3	16	70	14	56	33	0	3	62	1.12
125544--125625	11	7.5	11	68	9	51	34	0	2	63	1.08
125559--125613	17	3.3	17	70	14	60	40	0	1	58	1.09
125541--125619	33	2.4	33	100	0	158	35	0	2	62	1.09
125528--125619	33	2.7	35	90	8	106	38	0	3	58	1.14
132968--133026	30	2.0	29	96	3	109	20	20	10	49	1.77
135843--135876	17	1.9	18	88	5	52	23	0	2	73	0.97
136125--136176	23	2.2	23	79	3	59	44	15	9	30	1.78
144364--144414	27	2.0	27	88	11	81	27	5	9	56	1.54
144566--144641	29	2.7	29	73	6	75	30	1	6	61	1.29
144631--144748	59	2.0	59	100	0	236	42	6	8	42	1.61
150243--150275	2	16.5	2	100	0	66	48	0	0	51	1.00
152335--152359	11	2.3	11	100	0	50	24	8	24	44	1.80
153528--153798	134	2.0	134	97	0	506	32	11	12	42	1.79
161004--161039	17	2.1	17	89	0	54	33	2	0	63	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
168248--168296	25	2.0	25	84	8	64	22	4	6	67	1.30
170107--170176	34	2.0	35	83	8	90	48	7	0	44	1.30
178567--178760	59	3.3	59	81	6	198	26	16	10	46	1.80
178916--179059	58	2.5	59	77	10	152	48	13	13	25	1.78
183235--183299	31	2.1	31	82	2	78	40	10	9	40	1.72
212606--212703	50	1.9	51	85	2	135	33	22	15	28	1.94
212523--212800	43	6.3	43	72	12	152	30	22	16	29	1.96
213362--213420	26	2.3	26	82	5	75	52	11	11	23	1.71

Tables:   1

The End!