Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01004150.1 Kokia drynarioides strain JFW-HI SEQ_117354, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 14347
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36


Found at i:4097 original size:18 final size:18

Alignment explanation


    Indices: 4074--4109  Score: 72
    Period size: 18  Copynumber: 2.0  Consensus size: 18

       4064 TCATACTCAT

                              
       4074 ACACTTCATATGAAAGCG
          1 ACACTTCATATGAAAGCG

                              
       4092 ACACTTCATATGAAAGCG
          1 ACACTTCATATGAAAGCG

       4110 TATATAAATG


Statistics
Matches: 18,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  18   18  1.00

ACGTcount: A:0.39, C:0.22, G:0.17, T:0.22


Consensus pattern (18 bp):   
ACACTTCATATGAAAGCG

Found at i:11001 original size:41 final size:42

Alignment explanation


    Indices: 10944--11024  Score: 137
    Period size: 41  Copynumber: 2.0  Consensus size: 42

      10934 TTTTCTTTGT

                       *                              
      10944 TTGGTTAATAATTATTAGTTTTTTTTTT-ATATTACTAAATA
          1 TTGGTTAATAAATATTAGTTTTTTTTTTCATATTACTAAATA

                   *                                
      10985 TTGGTTACTAAATATTAGTTTTTTTTTTCATATTACTAAA
          1 TTGGTTAATAAATATTAGTTTTTTTTTTCATATTACTAAA

      11025 AAAATTACAT


Statistics
Matches: 37,  Mismatches: 2, Indels: 1
        0.93            0.05        0.03

Matches are distributed among these distances:
  41   26  0.70
  42   11  0.30

ACGTcount: A:0.31, C:0.05, G:0.07, T:0.57


Consensus pattern (42 bp):   
TTGGTTAATAAATATTAGTTTTTTTTTTCATATTACTAAATA

Found at i:14177 original size:17 final size:17

Alignment explanation


    Indices: 14142--14174  Score: 50
    Period size: 17  Copynumber: 2.0  Consensus size: 17

      14132 TTAATTCAAC

                    *        
      14142 TTTTTTATTTTAATAAA
          1 TTTTTTATATTAATAAA

                             
      14159 TTTTTTATATT-ATAAA
          1 TTTTTTATATTAATAAA

      14175 ATTATATTTT


Statistics
Matches: 15,  Mismatches: 1, Indels: 1
        0.88            0.06        0.06

Matches are distributed among these distances:
  16    5  0.33
  17   10  0.67

ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64


Consensus pattern (17 bp):   
TTTTTTATATTAATAAA
Done.