Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01004154.1 Kokia drynarioides strain JFW-HI SEQ_117363, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 873

Length: 1456
ACGTcount: A:0.29, C:0.17, G:0.19, T:0.36


Found at i:128 original size:32 final size:33

Alignment explanation


    Indices: 89--162  Score: 89
    Period size: 32  Copynumber: 2.3  Consensus size: 33

         79 GTCAAAGTTG

                     *      *         *      
         89 TTTATTTTATTAATTTTATTTTGA-TTAAATT-
          1 TTTATTTTACTAATTTCATTTTGACTAAAATTA

                     *                        
        120 TGTTATTTTCCTAATTTCATTTTGACTAAAATTA
          1 T-TTATTTTACTAATTTCATTTTGACTAAAATTA

                     
        154 TTTATTTTA
          1 TTTATTTTA

        163 AGTAAATAGG


Statistics
Matches: 35,  Mismatches: 5, Indels: 4
        0.80            0.11        0.09

Matches are distributed among these distances:
  31    1  0.03
  32   20  0.57
  33   13  0.37
  34    1  0.03

ACGTcount: A:0.28, C:0.05, G:0.04, T:0.62


Consensus pattern (33 bp):   
TTTATTTTACTAATTTCATTTTGACTAAAATTA

Done.