Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01000416.1 Kokia drynarioides strain JFW-HI SEQ_111244, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 682

Length: 1138
ACGTcount: A:0.33, C:0.16, G:0.17, T:0.34


Found at i:682 original size:44 final size:44

Alignment explanation


    Indices: 629--716  Score: 158
    Period size: 44  Copynumber: 2.0  Consensus size: 44

        619 ATATCAAATC

                        *                  *            
        629 TTATCACTATTTTAGGACACGGGATAAGCGATATCGTAACACAA
          1 TTATCACTATTTCAGGACACGGGATAAGCGAGATCGTAACACAA

                                                        
        673 TTATCACTATTTCAGGACACGGGATAAGCGAGATCGTAACACAA
          1 TTATCACTATTTCAGGACACGGGATAAGCGAGATCGTAACACAA

        717 GGACTAGAAT


Statistics
Matches: 42,  Mismatches: 2, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  44   42  1.00

ACGTcount: A:0.36, C:0.19, G:0.19, T:0.25


Consensus pattern (44 bp):   
TTATCACTATTTCAGGACACGGGATAAGCGAGATCGTAACACAA
Done.