Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01004165.1 Kokia drynarioides strain JFW-HI SEQ_117394, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 833

Length: 1389
ACGTcount: A:0.30, C:0.20, G:0.14, T:0.37


Found at i:164 original size:18 final size:17

Alignment explanation


    Indices: 141--174  Score: 50
    Period size: 18  Copynumber: 1.9  Consensus size: 17

        131 TTCACTATGA

                   *          
        141 TATAATTGTAAATTAAAT
          1 TATAATTAT-AATTAAAT

                            
        159 TATAATTATAATTAAA
          1 TATAATTATAATTAAA

        175 GTTAAATATA


Statistics
Matches: 15,  Mismatches: 1, Indels: 1
        0.88            0.06        0.06

Matches are distributed among these distances:
  17    7  0.47
  18    8  0.53

ACGTcount: A:0.53, C:0.00, G:0.03, T:0.44


Consensus pattern (17 bp):   
TATAATTATAATTAAAT
Done.