Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01000417.1 Kokia drynarioides strain JFW-HI SEQ_111245, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 800

Length: 1334
ACGTcount: A:0.28, C:0.22, G:0.17, T:0.33


Found at i:597 original size:34 final size:34

Alignment explanation


    Indices: 540--605  Score: 89
    Period size: 34  Copynumber: 1.9  Consensus size: 34

        530 ATATATATGG

                           *                  
        540 AAATGCAATGACAATGTAGATGCAGCGACAATAA
          1 AAATGCAATGACAATATAGATGCAGCGACAATAA

                         *            *      
        574 AAATGCAATGACATTAATA-ATGCAGGGACAAT
          1 AAATGCAATGACAAT-ATAGATGCAGCGACAAT

        606 TATACTAGAG


Statistics
Matches: 28,  Mismatches: 3, Indels: 2
        0.85            0.09        0.06

Matches are distributed among these distances:
  34   26  0.93
  35    2  0.07

ACGTcount: A:0.47, C:0.14, G:0.20, T:0.20


Consensus pattern (34 bp):   
AAATGCAATGACAATATAGATGCAGCGACAATAA
Done.