Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01004170.1 Kokia drynarioides strain JFW-HI SEQ_117400, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2251
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33


Found at i:1252 original size:27 final size:27

Alignment explanation


    Indices: 1222--1276  Score: 83
    Period size: 27  Copynumber: 2.0  Consensus size: 27

       1212 AACACTAAAA

                         *             
       1222 TGTTTACAAAAGATAGGAATGACAAAC
          1 TGTTTACAAAAGAAAGGAATGACAAAC

                       *         *     
       1249 TGTTTACAAAATAAAGGAATGTCAAAC
          1 TGTTTACAAAAGAAAGGAATGACAAAC

             
       1276 T
          1 T

       1277 ATTGCCAAAT


Statistics
Matches: 25,  Mismatches: 3, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  27   25  1.00

ACGTcount: A:0.47, C:0.11, G:0.16, T:0.25


Consensus pattern (27 bp):   
TGTTTACAAAAGAAAGGAATGACAAAC
Done.