Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01004172.1 Kokia drynarioides strain JFW-HI SEQ_117404, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3376
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33


Found at i:2715 original size:13 final size:13

Alignment explanation


    Indices: 2697--2725  Score: 58
    Period size: 13  Copynumber: 2.2  Consensus size: 13

       2687 ATTATTACCA

                         
       2697 TGATTGAAGTGAG
          1 TGATTGAAGTGAG

                         
       2710 TGATTGAAGTGAG
          1 TGATTGAAGTGAG

               
       2723 TGA
          1 TGA

       2726 ACAATAGATG


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   16  1.00

ACGTcount: A:0.31, C:0.00, G:0.38, T:0.31


Consensus pattern (13 bp):   
TGATTGAAGTGAG
Done.