Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01004177.1 Kokia drynarioides strain JFW-HI SEQ_117409, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3325
ACGTcount: A:0.38, C:0.14, G:0.11, T:0.37


Found at i:2308 original size:19 final size:18

Alignment explanation


    Indices: 2286--2334  Score: 53
    Period size: 19  Copynumber: 2.6  Consensus size: 18

       2276 AAATTAGTTG

                   *     *     
       2286 AAATTAATAATATTAATAA
          1 AAATTAAAAATA-AAATAA

                               
       2305 AAATGTAAAAATAAAATAA
          1 AAAT-TAAAAATAAAATAA

                       
       2324 AAATTATAAAA
          1 AAATTA-AAAA

       2335 ATGTAAGAAA


Statistics
Matches: 26,  Mismatches: 2, Indels: 4
        0.81            0.06        0.12

Matches are distributed among these distances:
  18    2  0.08
  19   17  0.65
  20    7  0.27

ACGTcount: A:0.69, C:0.00, G:0.02, T:0.29


Consensus pattern (18 bp):   
AAATTAAAAATAAAATAA
Done.