Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01004184.1 Kokia drynarioides strain JFW-HI SEQ_117417, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3896
ACGTcount: A:0.36, C:0.17, G:0.15, T:0.32


Found at i:2994 original size:25 final size:26

Alignment explanation


    Indices: 2966--3020  Score: 76
    Period size: 25  Copynumber: 2.2  Consensus size: 26

       2956 TTAAGATGGC

                       *              
       2966 TATATAAAAATTTTAA-ATAAAAAAA
          1 TATATAAAAATATTAATATAAAAAAA

                                 * *  
       2991 TATATAAAAATATTAATATAATATAA
          1 TATATAAAAATATTAATATAAAAAAA

                
       3017 TATA
          1 TATA

       3021 AATATTTAAA


Statistics
Matches: 26,  Mismatches: 3, Indels: 1
        0.87            0.10        0.03

Matches are distributed among these distances:
  25   15  0.58
  26   11  0.42

ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36


Consensus pattern (26 bp):   
TATATAAAAATATTAATATAAAAAAA
Done.