Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01004187.1 Kokia drynarioides strain JFW-HI SEQ_117420, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2802
ACGTcount: A:0.34, C:0.17, G:0.13, T:0.35


Found at i:2164 original size:7 final size:7

Alignment explanation


    Indices: 2152--2178  Score: 54
    Period size: 7  Copynumber: 3.9  Consensus size: 7

       2142 GCCCAAACCG

                   
       2152 ACCCAAT
          1 ACCCAAT

                   
       2159 ACCCAAT
          1 ACCCAAT

                   
       2166 ACCCAAT
          1 ACCCAAT

                  
       2173 ACCCAA
          1 ACCCAA

       2179 GCCATGTGAC


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   7   20  1.00

ACGTcount: A:0.44, C:0.44, G:0.00, T:0.11


Consensus pattern (7 bp):   
ACCCAAT

Done.