Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01004193.1 Kokia drynarioides strain JFW-HI SEQ_117427, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 14861
ACGTcount: A:0.34, C:0.18, G:0.17, T:0.31
Warning! 14 characters in sequence are not A, C, G, or T
Found at i:820 original size:50 final size:50
Alignment explanation
Indices: 766--1022 Score: 179
Period size: 50 Copynumber: 5.1 Consensus size: 50
756 GCGGATCCAG
766 TACCTCAAAGATACAAAAGGGAAGGGTTTAAGTCGCAACGGTGAACCTTA
1 TACCTCAAAGATACAAAAGGGAAGGGTTTAAGTCGCAACGGTGAACCTTA
** * * *** * * *
816 TACCTC--AGAGGCATGACGGGAAAAATTTAAGATCGCAATGGCGGATCC--A
1 TACCTCAAAGATACA-AAAGGGAAGGGTTTAAG-TCGCAACGG-TGAACCTTA
**
865 GTACCGGAAAGATACAAAAGGGAAGGGTTTAAGTCGCAACGGTGAACCTTA
1 -TACCTCAAAGATACAAAAGGGAAGGGTTTAAGTCGCAACGGTGAACCTTA
* * * * * * * * *
916 TACCTC--AGAGACATGACGGGAAAGATTTAAGACTGCAATGGCGGA--TTCA
1 TACCTCAAAGATACA-AAAGGGAAGGGTTTAAGTC-GCAACGGTGAACCTT-A
* *
965 GTACCTCAAAGATACAAAAGGGAAGGGTTTAAGTCGCAACAGTGAACCTTT
1 -TACCTCAAAGATACAAAAGGGAAGGGTTTAAGTCGCAACGGTGAACCTTA
1016 TACCTCA
1 TACCTCA
1023 GAGACATGAT
Statistics
Matches: 147, Mismatches: 44, Indels: 32
0.66 0.20 0.14
Matches are distributed among these distances:
48 13 0.09
49 32 0.22
50 58 0.39
51 31 0.21
52 13 0.09
ACGTcount: A:0.36, C:0.19, G:0.25, T:0.20
Consensus pattern (50 bp):
TACCTCAAAGATACAAAAGGGAAGGGTTTAAGTCGCAACGGTGAACCTTA
Found at i:1038 original size:100 final size:100
Alignment explanation
Indices: 726--1046 Score: 491
Period size: 100 Copynumber: 3.2 Consensus size: 100
716 GCACCATGAA
* * * *
726 ACATGGCGGGAAGGATCTAAGACCGCAACGGCGGATCCAGTACCTCAAAGATACAAAAGGGAAGG
1 ACATGACGGGAAAGATCTAAGACTGCAATGGCGGATCCAGTACCTCAAAGATACAAAAGGGAAGG
791 GTTTAAGTCGCAACGGTGAACCTTATACCTCAGAG
66 GTTTAAGTCGCAACGGTGAACCTTATACCTCAGAG
* * * **
826 GCATGACGGGAAAAATTTAAGA-TCGCAATGGCGGATCCAGTACCGGAAAGATACAAAAGGGAAG
1 ACATGACGGGAAAGATCTAAGACT-GCAATGGCGGATCCAGTACCTCAAAGATACAAAAGGGAAG
890 GGTTTAAGTCGCAACGGTGAACCTTATACCTCAGAG
65 GGTTTAAGTCGCAACGGTGAACCTTATACCTCAGAG
* *
926 ACATGACGGGAAAGATTTAAGACTGCAATGGCGGATTCAGTACCTCAAAGATACAAAAGGGAAGG
1 ACATGACGGGAAAGATCTAAGACTGCAATGGCGGATCCAGTACCTCAAAGATACAAAAGGGAAGG
* *
991 GTTTAAGTCGCAACAGTGAACCTTTTACCTCAGAG
66 GTTTAAGTCGCAACGGTGAACCTTATACCTCAGAG
**
1026 ACATGATTGGAAAGATCTAAG
1 ACATGACGGGAAAGATCTAAG
1047 TCGTAACGGT
Statistics
Matches: 200, Mismatches: 19, Indels: 4
0.90 0.09 0.02
Matches are distributed among these distances:
100 199 1.00
101 1 0.00
ACGTcount: A:0.36, C:0.19, G:0.27, T:0.19
Consensus pattern (100 bp):
ACATGACGGGAAAGATCTAAGACTGCAATGGCGGATCCAGTACCTCAAAGATACAAAAGGGAAGG
GTTTAAGTCGCAACGGTGAACCTTATACCTCAGAG
Found at i:1256 original size:50 final size:51
Alignment explanation
Indices: 749--1257 Score: 240
Period size: 49 Copynumber: 10.3 Consensus size: 51
739 GATCTAAGAC
* * *
749 CGCAACGGCGGATCCAGTACCTCAAAGATACA-AAAGGGAAGGGTTTAAGT
1 CGCAACGGCGGATCCAGTACCTCAAAGAGACATAAAGGGAAAGATTTAAGT
* * * * * *
799 CGCAACGG-TGAACCTTA-TACCTC--AGAGGCATGACGGGAAAAATTTAAGAT
1 CGCAACGGCGGATCC--AGTACCTCAAAGAGACATAAAGGGAAAGATTTAAG-T
* ** * * *
849 CGCAATGGCGGATCCAGTACCGGAAAGATACA-AAAGGGAAGGGTTTAAGT
1 CGCAACGGCGGATCCAGTACCTCAAAGAGACATAAAGGGAAAGATTTAAGT
* * * * *
899 CGCAACGG-TGAACCTTA-TACCTC--AGAGACATGACGGGAAAGATTTAAGA
1 CGCAACGGCGGATCC--AGTACCTCAAAGAGACATAAAGGGAAAGATTTAAGT
* * * * *
948 CTGCAATGGCGGATTCAGTACCTCAAAGATACA-AAAGGGAAGGGTTTAAGT
1 C-GCAACGGCGGATCCAGTACCTCAAAGAGACATAAAGGGAAAGATTTAAGT
* * * ** * ** *
999 CGCAACAG-TGAACCTTTTACCTC--AGAGACATGATTGGAAAGATCTAAGT
1 CGCAACGGCGGATCC-AGTACCTCAAAGAGACATAAAGGGAAAGATTTAAGT
* * * * * *
1048 CGTAACGGTGGATCCAGT-GCTGC-GA-AGACATGAAGGGAAAGATCTAAGT
1 CGCAACGGCGGATCCAGTACCT-CAAAGAGACATAAAGGGAAAGATTTAAGT
* * * * * * * *
1097 CACAACGACGGATCTAGTACCAC-GA-AGACA-CAAGGGAGAGGTTTAAGT
1 CGCAACGGCGGATCCAGTACCTCAAAGAGACATAAAGGGAAAGATTTAAGT
* * * *
1145 CGCAATGGCAGA-CCTAGTACCT--AAGAGACATAAAGGGAAAGATCT-AGAC
1 CGCAACGGCGGATCC-AGTACCTCAAAGAGACATAAAGGGAAAGATTTAAG-T
* * * *
1194 CGTAACGGCGGATCCAGTACCACAAAGATACA-AAAGGGAAAGGTTTAAGT
1 CGCAACGGCGGATCCAGTACCTCAAAGAGACATAAAGGGAAAGATTTAAGT
*
1244 CGCAACGACGGATC
1 CGCAACGGCGGATC
1258 GTGAACCTTA
Statistics
Matches: 331, Mismatches: 98, Indels: 60
0.68 0.20 0.12
Matches are distributed among these distances:
47 2 0.01
48 54 0.16
49 127 0.38
50 93 0.28
51 44 0.13
52 11 0.03
ACGTcount: A:0.36, C:0.19, G:0.27, T:0.18
Consensus pattern (51 bp):
CGCAACGGCGGATCCAGTACCTCAAAGAGACATAAAGGGAAAGATTTAAGT
Found at i:1752 original size:39 final size:39
Alignment explanation
Indices: 1707--1923 Score: 177
Period size: 39 Copynumber: 5.6 Consensus size: 39
1697 CTACATCGTT
* *
1707 AACCAATCTCTTACCCCGAGCCTAGGGTAGATCGTCATC
1 AACCAATCTTTTACCCCGAGCCTAGGGCAGATCGTCATC
* * * * *
1746 AACCAATCTTTTACCCCAAGCCTGGGGCAGATTG-AAGCC
1 AACCAATCTTTTACCCCGAGCCTAGGGCAGATCGTCA-TC
**** * *
1785 ATTTGATCTTTTACCCCGAGCCTGGGGCAGATCATCATC
1 AACCAATCTTTTACCCCGAGCCTAGGGCAGATCGTCATC
* * * * *
1824 AACCAATCTTTTACCCCAAGCCTGGGGCAGATTG-AAGCC
1 AACCAATCTTTTACCCCGAGCCTAGGGCAGATCGTCA-TC
**** * *
1863 ATTTGATCTTTTACCCCGAGCCTAGTGCAGATCATCATC
1 AACCAATCTTTTACCCCGAGCCTAGGGCAGATCGTCATC
*
1902 AACCAATCTCTTACCCCGAGCC
1 AACCAATCTTTTACCCCGAGCC
1924 AAAGGTAGAT
Statistics
Matches: 133, Mismatches: 41, Indels: 8
0.73 0.23 0.04
Matches are distributed among these distances:
38 2 0.02
39 129 0.97
40 2 0.02
ACGTcount: A:0.25, C:0.32, G:0.18, T:0.25
Consensus pattern (39 bp):
AACCAATCTTTTACCCCGAGCCTAGGGCAGATCGTCATC
Found at i:1846 original size:78 final size:78
Alignment explanation
Indices: 1712--1923 Score: 361
Period size: 78 Copynumber: 2.7 Consensus size: 78
1702 TCGTTAACCA
* * *
1712 ATCTCTTACCCCGAGCCTAGGGTAGATCGTCATCAACCAATCTTTTACCCCAAGCCTGGGGCAGA
1 ATCTTTTACCCCGAGCCTAGGGCAGATCATCATCAACCAATCTTTTACCCCAAGCCTGGGGCAGA
1777 TTGAAGCCATTTG
66 TTGAAGCCATTTG
*
1790 ATCTTTTACCCCGAGCCTGGGGCAGATCATCATCAACCAATCTTTTACCCCAAGCCTGGGGCAGA
1 ATCTTTTACCCCGAGCCTAGGGCAGATCATCATCAACCAATCTTTTACCCCAAGCCTGGGGCAGA
1855 TTGAAGCCATTTG
66 TTGAAGCCATTTG
* * *
1868 ATCTTTTACCCCGAGCCTAGTGCAGATCATCATCAACCAATCTCTTACCCCGAGCC
1 ATCTTTTACCCCGAGCCTAGGGCAGATCATCATCAACCAATCTTTTACCCCAAGCC
1924 AAAGGTAGAT
Statistics
Matches: 126, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
78 126 1.00
ACGTcount: A:0.25, C:0.32, G:0.18, T:0.25
Consensus pattern (78 bp):
ATCTTTTACCCCGAGCCTAGGGCAGATCATCATCAACCAATCTTTTACCCCAAGCCTGGGGCAGA
TTGAAGCCATTTG
Found at i:1982 original size:78 final size:78
Alignment explanation
Indices: 1712--1996 Score: 333
Period size: 78 Copynumber: 3.7 Consensus size: 78
1702 TCGTTAACCA
* * * *
1712 ATCTCTTACCCCGAGCCT-AGGGTAGATCGTCATCAACCAATCTTTTACCCCAAGCCTGGGGCAG
1 ATCTTTTACCCCGAGCCTGA-GGCAGATCATCATCAACCAATCTCTTACCCCAAGCCTGGGGCAG
1776 ATTGAAGCCATTTG
65 ATTGAAGCCATTTG
* *
1790 ATCTTTTACCCCGAGCCTGGGGCAGATCATCATCAACCAATCTTTTACCCCAAGCCTGGGGCAGA
1 ATCTTTTACCCCGAGCCTGAGGCAGATCATCATCAACCAATCTCTTACCCCAAGCCTGGGGCAGA
1855 TTGAAGCCATTTG
66 TTGAAGCCATTTG
* *** *
1868 ATCTTTTACCCCGAGCCT-AGTGCAGATCATCATCAACCAATCTCTTACCCCGAGCCAAAGGTAG
1 ATCTTTTACCCCGAGCCTGAG-GCAGATCATCATCAACCAATCTCTTACCCCAAGCCTGGGGCAG
* *
1932 ATT-ATAGTCATTCG
65 ATTGA-AGCCATTTG
* * * * * * * *
1946 ATCTCTTACCCCAAGCTTGAGGCAAATCAACGTCAACCAAACTCCTACCCC
1 ATCTTTTACCCCGAGCCTGAGGCAGATCATCATCAACCAATCTCTTACCCC
1997 GATCACGGAG
Statistics
Matches: 182, Mismatches: 21, Indels: 8
0.86 0.10 0.04
Matches are distributed among these distances:
77 2 0.01
78 178 0.98
79 2 0.01
ACGTcount: A:0.27, C:0.31, G:0.17, T:0.25
Consensus pattern (78 bp):
ATCTTTTACCCCGAGCCTGAGGCAGATCATCATCAACCAATCTCTTACCCCAAGCCTGGGGCAGA
TTGAAGCCATTTG
Found at i:2503 original size:115 final size:115
Alignment explanation
Indices: 2286--2496 Score: 343
Period size: 115 Copynumber: 1.8 Consensus size: 115
2276 CCATGCTCGG
2286 TGTGAGCAAATCTTCGAATCCCAGCTTCCTGAAGAGATACTGAGAAGCAGGGCGAAGCAATAAAA
1 TGTGAGCAAATCTTCGAATCCCAGCTTCCTGAAGAGATACTGAGAAGCAGGGCGAAGCAATAAAA
* *
2351 TGGTTAGCTTATTGATGAGATACAGAGAAGTATACCAACTCAGGGCTTGA
66 TGGTCAGCTTACTGATGAGATACAGAGAAGTATACCAACTCAGGGCTTGA
* *
2401 TGTGAGCAAATCTTCGAA-CCGCAGCTTCCTGATGAGATACTGAGAAGCAGGTCGAAGCAATAAA
1 TGTGAGCAAATCTTCGAATCC-CAGCTTCCTGAAGAGATACTGAGAAGCAGGGCGAAGCAATAAA
* * *
2465 GTGGTCAGCTTCCTGATGAGATACGGAGAAGT
65 ATGGTCAGCTTACTGATGAGATACAGAGAAGT
2497 GAACCAAATC
Statistics
Matches: 88, Mismatches: 7, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
114 2 0.02
115 86 0.98
ACGTcount: A:0.33, C:0.18, G:0.27, T:0.22
Consensus pattern (115 bp):
TGTGAGCAAATCTTCGAATCCCAGCTTCCTGAAGAGATACTGAGAAGCAGGGCGAAGCAATAAAA
TGGTCAGCTTACTGATGAGATACAGAGAAGTATACCAACTCAGGGCTTGA
Found at i:2984 original size:6 final size:6
Alignment explanation
Indices: 2946--3037 Score: 57
Period size: 6 Copynumber: 15.8 Consensus size: 6
2936 TATTTTAAGG
* * * * **
2946 TTAAAT TT-ATT TTGAAT ATAAAT TT-ATT TTAAAT TTAAAT TT-GTT
1 TTAAAT TTAAAT TTAAAT TTAAAT TTAAAT TTAAAT TTAAAT TTAAAT
* * * *
2991 TTAAAAT TTAAAT TT-AAT ATAAAT TTAGAT TTATAT GTAAAT TTAAA
1 TT-AAAT TTAAAT TTAAAT TTAAAT TTAAAT TTAAAT TTAAAT TTAAA
3038 ACTTATTATA
Statistics
Matches: 63, Mismatches: 18, Indels: 10
0.69 0.20 0.11
Matches are distributed among these distances:
5 15 0.24
6 45 0.71
7 3 0.05
ACGTcount: A:0.43, C:0.00, G:0.04, T:0.52
Consensus pattern (6 bp):
TTAAAT
Found at i:2999 original size:18 final size:17
Alignment explanation
Indices: 2934--3037 Score: 109
Period size: 17 Copynumber: 6.0 Consensus size: 17
2924 ATTCTAAAAT
**
2934 TTTATTTTAAGGTTAAA
1 TTTATTTTAAATTTAAA
* *
2951 TTTATTTTGAATATAAA
1 TTTATTTTAAATTTAAA
2968 TTTATTTTAAATTTAAA
1 TTTATTTTAAATTTAAA
*
2985 TTTGTTTTAAAATTTAAA
1 TTTATTTT-AAATTTAAA
* * *
3003 TTTAATATAAATTTAGA
1 TTTATTTTAAATTTAAA
*
3020 TTTATATGTAAATTTAAA
1 TTTAT-TTTAAATTTAAA
3038 ACTTATTATA
Statistics
Matches: 71, Mismatches: 14, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
17 47 0.66
18 24 0.34
ACGTcount: A:0.41, C:0.00, G:0.06, T:0.53
Consensus pattern (17 bp):
TTTATTTTAAATTTAAA
Found at i:3003 original size:35 final size:34
Alignment explanation
Indices: 2934--3024 Score: 101
Period size: 35 Copynumber: 2.6 Consensus size: 34
2924 ATTCTAAAAT
** *
2934 TTTATTTTAAGGTTAAATTTATTTTGAATATAAA
1 TTTATTTTAAATTTAAATTTATTTTAAATATAAA
* *
2968 TTTATTTTAAATTTAAATTTGTTTTAAAATTTAAA
1 TTTATTTTAAATTTAAATTTATTTT-AAATATAAA
* * *
3003 TTTAATATAAATTTAGATTTAT
1 TTTATTTTAAATTTAAATTTAT
3025 ATGTAAATTT
Statistics
Matches: 47, Mismatches: 9, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
34 22 0.47
35 25 0.53
ACGTcount: A:0.40, C:0.00, G:0.05, T:0.55
Consensus pattern (34 bp):
TTTATTTTAAATTTAAATTTATTTTAAATATAAA
Found at i:4931 original size:29 final size:28
Alignment explanation
Indices: 4858--5233 Score: 249
Period size: 30 Copynumber: 12.8 Consensus size: 28
4848 GGAGGTCCCT
** * *
4858 AAACTATCCAAAAATTATACTTTGACCCCC
1 AAACT-TCCAAAAATTCCA-TTTTACCCCA
* *
4888 AAACTTCTCTAAAATTCCACTTTTACCCCC
1 AAACTTC-CAAAAATTCCA-TTTTACCCCA
*
4918 GAACTTCCAAAAA-TCCTAATTTTGACCCCA
1 AAACTTCCAAAAATTCC--ATTTT-ACCCCA
**
4948 AAACTTCCAAAAATTACCATTTTACCCTT
1 AAACTTCCAAAAATT-CCATTTTACCCCA
* *
4977 AAACTTCCAAAAAATCTCGATTTTAACCCTA
1 AAACTTCC-AAAAAT-TCCATTTT-ACCCCA
*
5008 AAACTTCC-AAAATTACCATTTTACCCCT
1 AAACTTCCAAAAATT-CCATTTTACCCCA
** ***
5036 AAACTTCCAAAAAAACCTGATTTTCACCTTG
1 AAACTTCCAAAAATTCC--ATTTT-ACCCCA
*
5067 AAACTTCCAAAAATTACCATTTTACCCCC
1 AAACTTCCAAAAATT-CCATTTTACCCCA
* * * ** *
5096 GAACCTCTAAAAATCTTGATTTTAACCTCA
1 AAACTTCCAAAAAT-TCCATTTT-ACCCCA
* *
5126 AAACTTCCAAAAATTACCATTTCACCCTCG
1 AAACTTCCAAAAATT-CCATTTTACCC-CA
*
5156 AACCTT-CAAAAATTCCATTTTTACCCCA
1 AAACTTCCAAAAATTCCA-TTTTACCCCA
* *
5184 AAAC-TCTCAAAAATTACTATTTTACCCCT
1 AAACTTC-CAAAAATT-CCATTTTACCCCA
5213 AAACTTCC-AAAATTCCATTTT
1 AAACTTCCAAAAATTCCATTTT
5234 TAACCTAAAA
Statistics
Matches: 275, Mismatches: 47, Indels: 51
0.74 0.13 0.14
Matches are distributed among these distances:
27 7 0.03
28 31 0.11
29 98 0.36
30 104 0.38
31 31 0.11
32 4 0.01
ACGTcount: A:0.37, C:0.30, G:0.02, T:0.31
Consensus pattern (28 bp):
AAACTTCCAAAAATTCCATTTTACCCCA
Found at i:4961 original size:59 final size:59
Alignment explanation
Indices: 4882--5284 Score: 349
Period size: 59 Copynumber: 6.8 Consensus size: 59
4872 TTATACTTTG
* * * *
4882 ACCCCCAAACTTCTCTAAAATT-CCACTTTTACCCCCGAACTTCCAAAAATCCTAATTTTG
1 ACCCCAAAACTTC-CAAAAATTACCA-TTTTACCCCCGAACTTCCAAAAATCCTGATTTTA
***
4942 ACCCCAAAACTTCCAAAAATTACCATTTTACCCTTAAACTTCCAAAAAAT-CTCGATTTTA
1 ACCCCAAAACTTCCAAAAATTACCATTTTACCCCCGAACTTCC-AAAAATCCT-GATTTTA
* ** * *
5002 ACCCTAAAACTTCC-AAAATTACCATTTTACCCCTAAACTTCCAAAAAAACCTGATTTTC
1 ACCCCAAAACTTCCAAAAATTACCATTTTACCCCCGAACTTCC-AAAAATCCTGATTTTA
*** * * *
5061 ACCTTGAAACTTCCAAAAATTACCATTTTACCCCCGAACCTCTAAAAATCTTGATTTTA
1 ACCCCAAAACTTCCAAAAATTACCATTTTACCCCCGAACTTCCAAAAATCCTGATTTTA
* * * *
5120 ACCTCAAAACTTCCAAAAATTACCATTTCACCCTCGAACCTT-CAAAAATTCC--ATTTTT
1 ACCCCAAAACTTCCAAAAATTACCATTTTACCCCCGAA-CTTCCAAAAA-TCCTGATTTTA
* ** *
5178 ACCCCAAAAC-TCTCAAAAATTACTATTTTACCCCTAAACTTCCAAAATTCC--ATTTTTA
1 ACCCCAAAACTTC-CAAAAATTACCATTTTACCCCCGAACTTCCAAAAATCCTGA-TTTTA
** * * * * *
5236 ACCTAAAAACTTTCAAAACTTACCCTTCTACCCCCGGA-TGTCCAAAAAT
1 ACCCCAAAACTTCCAAAAATTACCATTTTACCCCCGAACT-TCCAAAAAT
5285 TCCATTTTCG
Statistics
Matches: 284, Mismatches: 47, Indels: 26
0.80 0.13 0.07
Matches are distributed among these distances:
57 10 0.04
58 77 0.27
59 128 0.45
60 69 0.24
ACGTcount: A:0.37, C:0.31, G:0.03, T:0.30
Consensus pattern (59 bp):
ACCCCAAAACTTCCAAAAATTACCATTTTACCCCCGAACTTCCAAAAATCCTGATTTTA
Found at i:5245 original size:29 final size:29
Alignment explanation
Indices: 5115--5253 Score: 106
Period size: 29 Copynumber: 4.8 Consensus size: 29
5105 AAAATCTTGA
5115 TTTTAACCTCAAAACTTCCAAAAATTACCA-
1 TTTTAACCTCAAAACTTCC-AAAATT-CCAT
* * * * *
5145 TTTCACCCTCGAACCTTCAAAAATTCCAT
1 TTTTAACCTCAAAACTTCCAAAATTCCAT
* * *
5174 TTTT-ACCCCAAAACTCTCAAAAATTAC-T
1 TTTTAACCTCAAAACT-TCCAAAATTCCAT
* *
5202 ATTTT-ACCCCTAAACTTCCAAAATTCCAT
1 -TTTTAACCTCAAAACTTCCAAAATTCCAT
* *
5231 TTTTAACCTAAAAACTTTCAAAA
1 TTTTAACCTCAAAACTTCCAAAA
5254 CTTACCCTTC
Statistics
Matches: 86, Mismatches: 18, Indels: 11
0.75 0.16 0.10
Matches are distributed among these distances:
28 24 0.28
29 48 0.56
30 14 0.16
ACGTcount: A:0.39, C:0.28, G:0.01, T:0.32
Consensus pattern (29 bp):
TTTTAACCTCAAAACTTCCAAAATTCCAT
Found at i:6746 original size:276 final size:275
Alignment explanation
Indices: 6228--7983 Score: 1512
Period size: 276 Copynumber: 6.3 Consensus size: 275
6218 GAGGAAAAAA
* *
6228 AAAAGAAAATTGATGAAATCAACGAAGAATCTCCCTTCCAAATACAAGCAGCTCAGTCACATGCA
1 AAAA-AAAATTGATGAAATCAAAGAAGAATCT-CCTGCCAAATACAAGCAGCTCAGTCACATGCA
* * ** *** * * *
6293 AATATCTTGAAATCGCCATATAATATGGTC-GTTTTAAGATTAAAAAAAAAGAAATTATTATTTT
64 ATTATCTTGAAACCATCGCGTAAGATGG-CAATTTT-A-A--AATAAAAAAGAAATTATTATTTT
*
6357 TTATATCAAG-A-A-TGTCGTGTAATAGAGTCGAGTGAAACAAATATTATTTTAGTTTAAATTCT
124 TTATATCAAGAACATTG-CGTGT--TAGAGTCGAGTGAAACAAATATTATTTTAGGTTAAATTCT
*
6419 AAGAATAGTCCTTGTACTTATTTATTT-TAGCGGATTTTGTA-CCTCTATTTTTATTTACTCGTA
186 AAGAATAGTCCTTGTACTTATTGATTTGT-GCGGA-TTTG-ACCCTCTATTTTTATTTACTCGTA
*
6482 GCATTCAAATTGGCCTCTTAAGTTTGAG
248 GCATTCAAATTGGCGTCTTAAGTTTGAG
* * *
6510 -AAAAAAATTGATGAAATCAAAGAAGAATCTCCTAGCCAAATA-AGAGCAACTCAATAACATGCA
1 AAAAAAAATTGATGAAATCAAAGAAGAATCTCCT-GCCAAATACA-AGCAGCTCAGTCACATGCA
* * *
6573 ATTATATTGAAACCACCGCGTAAGACGGCAATTTTAAAATAAAAAAGAAATTATTATTTTTTATA
64 ATTATCTTGAAACCATCGCGTAAGATGGCAATTTTAAAATAAAAAAGAAATTATTATTTTTTATA
* * * *
6638 TCAAGAACATTGTGTGTTAGAGTCGAGTTAAACAAATATTATTTTTTGGTTAAATTTTAAGAATA
129 TCAAGAACATTGCGTGTTAGAGTCGAGTGAAACAAATATTA-TTTTAGGTTAAATTCTAAGAATA
** * * ***
6703 GTCCTTGTACTTATTGATTTGTGTAGATTTGACCCTATATTTTTATTTACTCGTAGCTTTCTTGT
193 GTCCTTGTACTTATTGATTTGTGCGGATTTGACCCTCTATTTTTATTTACTCGTAGCATTCAAAT
* *
6768 TGGCGTCTTTATGTTGGAG
258 TGGCGTC-TTAAGTTTGAG
* ** * **
6787 -GAAAAAATCAATGAAATCAAAGAAGAATCTCCCTGCCAAATACAAGCAGGTCAGTTGCATGCAA
1 AAAAAAAATTGATGAAATCAAAGAAGAATCT-CCTGCCAAATACAAGCAGCTCAGTCACATGCAA
* * * * * *
6851 TTATCTTGAAACCGTCGCGTAATATGGTAGTTTTAAAATAGAAAAGAAA-TATTTCTTTTTTATA
65 TTATCTTGAAACCATCGCGTAAGATGGCAATTTTAAAATAAAAAAGAAATTA-TTATTTTTTATA
** * * ** * * *
6915 TCAAGAATGTTGCTTGTTAGAGTTGAAAGAAACAAATATTATTTTTGGTTATATTCTAAGAGTAG
129 TCAAGAACATTGCGTGTTAGAGTCGAGTGAAACAAATATTATTTTAGGTTAAATTCTAAGAATAG
* * * *** * * * *
6980 TCCTTGAATTTATAGATTTGCATGGATTTGATCCCTTTATTTTTTTTTACTTGTAGCTTTCAAAT
194 TCCTTGTACTTATTGATTTGTGCGGATTTGA-CCCTCTATTTTTATTTACTCGTAGCATTCAAAT
* *
7045 TGGTGTCTTCAGTTTGAG
258 TGGCGTCTTAAGTTTGAG
** *
7063 AATAAAAAAAAAAGAAAAAAGATGAAATCAACGAAGAATCTCCTTGCCAAATACAAGCAGCTCAG
1 ---------AAAA-AAAATTGATGAAATCAAAGAAGAATCTCC-TGCCAAATACAAGCAGCTCAG
** * * * *
7128 TCATGTGCAATTATCTTGAAACCACCGCGTTAGATAG-AAGTTTTAAGAT-AAAAA-AAATTATT
55 TCACATGCAATTATCTTGAAACCATCGCGTAAGATGGCAA-TTTTAAAATAAAAAAGAAATTATT
* ** * *
7190 ATTTTTTATATTAAGAAAGCA--GCACGTCA-ACGTCGAGTGAAACAAATATAATTTTAGGTTAA
119 ATTTTTTATATCAAG-AA-CATTGCGTGTTAGA-GTCGAGTGAAACAAATATTATTTTAGGTTAA
* * ** * * *
7252 ATTCTAAGAATTGTCCTTGAACAAATTGATTTG-GCCGGAATTGGTCCCTCTATTTTT-TTAACT
181 ATTCTAAGAATAGTCCTTGTACTTATTGATTTGTG-CGG-ATTTGACCCTCTATTTTTATTTACT
* *
7315 CGTAGCATTCAAGTTGGCCTCTTAAGTTTGAG
244 CGTAGCATTCAAATTGGCGTCTTAAGTTTGAG
* * * * * *
7347 AAAAATGAAAAATTTATGAAATCAACGAAGAATCGTGCTGTCAAATACAAGAAGCTCAGTAACAT
1 --AAA--AAAAATTGATGAAATCAAAGAAGAATC-TCCTGCCAAATACAAGCAGCTCAGTCACAT
* * * * * * *
7412 GCAACTATCTTGAAACCATTGCTTAAGATTGCAATTTTAAGATAAAAAACAACTTATTATTTTTT
61 GCAATTATCTTGAAACCATCGCGTAAGATGGCAATTTTAAAATAAAAAAGAAATTATTATTTTTT
* ** * * * *
7477 ACATCAAGAACGCCT-CGTGTTAGTGTTGCGTGAAACAAATATTATTTTAGTTTAAATTCTAAGA
126 ATATCAAGAAC-ATTGCGTGTTAGAGTCGAGTGAAACAAATATTATTTTAGGTTAAATTCTAAGA
* * * ** * * * *
7541 ATAGTCCTTATACTTATAGATTTGCGCATATTTGGTCCCT-TGTTTTTATTTATTCGTAGCACTC
190 ATAGTCCTTGTACTTATTGATTTGTGCGGATTT-GACCCTCTATTTTTATTTACTCGTAGCATTC
*
7605 AAATTGGCATCTTAAGTTTGAG
254 AAATTGGCGTCTTAAGTTTGAG
* * * * *
7627 AAAAAAAATCGATGAAATCAAAGAAGAATCTCCTCGCCAAATACAAGCAGCTTAGTCAGATGGAT
1 AAAAAAAATTGATGAAATCAAAGAAGAATCTCCT-GCCAAATACAAGCAGCTCAGTCACATGCAA
* * * * * *
7692 TTATCTTGAAACCGTTGCGTAAGATGGTAACTTTAAAATAGAAAATAAA-TA-T-TTTTTTATAT
65 TTATCTTGAAACCATCGCGTAAGATGGCAATTTTAAAATAAAAAAGAAATTATTATTTTTTATAT
* * ** * *
7754 CAAGAATATTGCGTTTTAGAGTCGAAAGAAACAAATATTATTTTTGGTTAAATTCTAAGAGTAGT
130 CAAGAACATTGCGTGTTAGAGTCGAGTGAAACAAATATTATTTTAGGTTAAATTCTAAGAATAGT
* * * *
7819 CCTTG-AATTTTTAAATTT-T-CATGGATTTGATCCCTCTATTTTTATTTACTCGTAGCTTTCAA
195 CCTTGTACTTATT-GATTTGTGC--GGATTTGA-CCCTCTATTTTTATTTACTCGTAGCATTCAA
7881 ATTGGCGTCTTAAGTTTGAG
256 ATTGGCGTCTTAAGTTTGAG
* * *
7901 AATAAAAAAAGAAATTTGATGAAATCAAGGAAGAATCTCCCTGCCAAAAACAAGCAGCTCAATCA
1 -----AAAAA-AAA-TTGATGAAATCAAAGAAGAATCT-CCTGCCAAATACAAGCAGCTCAGTCA
*
7966 CATGCAACTATCTTGAAA
58 CATGCAATTATCTTGAAA
7984 TTGTCGTGTT
Statistics
Matches: 1189, Mismatches: 224, Indels: 123
0.77 0.15 0.08
Matches are distributed among these distances:
271 1 0.00
272 6 0.01
273 76 0.06
274 42 0.04
275 6 0.01
276 234 0.20
277 225 0.19
278 94 0.08
279 34 0.03
280 193 0.16
281 59 0.05
282 3 0.00
284 32 0.03
285 88 0.07
286 17 0.01
287 79 0.07
ACGTcount: A:0.36, C:0.14, G:0.15, T:0.35
Consensus pattern (275 bp):
AAAAAAAATTGATGAAATCAAAGAAGAATCTCCTGCCAAATACAAGCAGCTCAGTCACATGCAAT
TATCTTGAAACCATCGCGTAAGATGGCAATTTTAAAATAAAAAAGAAATTATTATTTTTTATATC
AAGAACATTGCGTGTTAGAGTCGAGTGAAACAAATATTATTTTAGGTTAAATTCTAAGAATAGTC
CTTGTACTTATTGATTTGTGCGGATTTGACCCTCTATTTTTATTTACTCGTAGCATTCAAATTGG
CGTCTTAAGTTTGAG
Found at i:7823 original size:838 final size:837
Alignment explanation
Indices: 6196--8021 Score: 2267
Period size: 838 Copynumber: 2.2 Consensus size: 837
6186 ACACGTAGTA
*
6196 TTCAAATTGGTGTCTTAAGTTTGAG--GAAAAAAAAAAGAAAATTGATGAAATCAACGAAGAATC
1 TTCAAATTGGTGTCTTAAGTTTGAGAATAAAAAAAAAAGAAAATTGATGAAATCAACGAAGAATC
* * * * * **
6259 TCCCTT-CCAAATACAAGCAGCTCAGTCACATGCAAATATCTTGAAATCGCCATATAATATGGTC
66 T-CCTTGCCAAATACAAGCAGCTCAGTCACATGCAAATATCTTGAAATCGCCGTGTTACATAGAA
* *
6323 GTTTTAAGATTAAAAAAAAAGAAATTATTATTTTTTATATCAAGAATGTCGTGTAATAGAGTCGA
130 GTTTTAAGA-T----AAAAA-AAATTATTATTTTTTATATCAAGAAAGTCGCGTAATAGAGTCGA
* * * ** *
6388 GTGAAACAAATATTATTTTAGTTTAAATTCTAAGAATAGTCCTTGTACTTATTTATTTTAGCGGA
189 GTGAAACAAATATAATTTTAGGTTAAATTCTAAGAATAGTCCTTGAACAAATTGATTTTAGCGGA
* * *
6453 TTTTGTACCTCTATTTTTATTTACTCGTAGCATTCAAATTGGCCTCTTAAGTTTGAGAAAAAAAT
254 ATTGGTACCTCTATTTTTATTAACTCGTAGCATTCAAATTGGCCTCTTAAGTTTGAGAAAAAAAT
*
6518 TGATGAAATCAAAGAAGAATCTCCTAGCCAAATAAGAGCAACTCAATAACATGCAATTATATTGA
319 TGATGAAATCAAAGAAGAATCTCCTAGCCAAATAAGAGCAACTCAATAACATGCAACTATATTGA
* * *
6583 AACCACCGCGTAAGACGGCAATTTTAAAATAAAAAAGAAATTATTATTTTTTATATCAAGAACAT
384 AACCACCGCGTAAGACGGCAATTTTAAAATAAAAAACAAATTATTATTTTTTACATCAAGAACAC
* * * * *
6648 TGTGTGTTAGAGTCGAGTTAAACAAATATTATTTTTTGGTTAAATTTTAAGAATAGTCCTTGTAC
449 TGCGTGTTAGAGTCGAGTGAAACAAATATTATTTTTAGGTTAAATTCTAAGAATAGTCCTTATAC
* * * ** *** *
6713 TTATTGATTTGTGTAGATTTGACCCTATATTTTTATTTACTCGTAGCTTTCTTGTTGGCGTCTTT
514 TTATAGATTTGCGCAGATTTGACCCTATATTTTTATTTACTCGTAGCACTCAAATTGGCATCTTT
* * * *
6778 ATGTTGGAGGAAAAAATCAATGAAATCAAAGAAGAATCTCCCTGCCAAATACAAGCAGGTCAGTT
579 AAGTTGGAGAAAAAAATCAATGAAATCAAAGAAGAATCTCCCTGCCAAATACAAGCAGCTCAGTA
* **
6843 GCATGCAATTATCTTGAAACCGTCGCGTAATATGGTAGTTTTAAAATAGAAAAGAAATATTTCTT
644 GCATGCAATTATCTTGAAACCGTCGCGTAAGATGGTAACTTTAAAATAGAAAAGAAATA-TTCTT
* * *
6908 TTTTATATCAAGAATGTTGCTTGTTAGAGTTGAAAGAAACAAATATTATTTTTGGTTATATTCTA
708 TTTTATATCAAGAATATTGCTTGTTAGAGTCGAAAGAAACAAATATTATTTTTGGTTAAATTCTA
* * * *
6973 AGAGTAGTCCTTGAATTTATAGATTTGCATGGATTTGATCCCTTTATTTTTTTTTACTTGTAGCT
773 AGAGTAGTCCTTGAATTTATAAATTTGCATGGATTTGATCCCTCTATTTTTATTTACTCGTAGCT
* **
7038 TTCAAATTGGTGTCTTCAGTTTGAGAATAAAAAAAAAAGAAAAAAGATGAAATCAACGAAGAATC
1 TTCAAATTGGTGTCTTAAGTTTGAGAATAAAAAAAAAAGAAAATTGATGAAATCAACGAAGAATC
** * * * * *
7103 TCCTTGCCAAATACAAGCAGCTCAGTCATGTGCAATTATCTTGAAACCACCGCGTTAGATAGAAG
66 TCCTTGCCAAATACAAGCAGCTCAGTCACATGCAAATATCTTGAAATCGCCGTGTTACATAGAAG
* * *
7168 TTTTAAGATAAAAAAAATTATTATTTTTTATATTAAGAAAG-CAGCACGTCA-A-CGTCGAGTGA
131 TTTTAAGATAAAAAAAATTATTATTTTTTATATCAAGAAAGTC-G--CGTAATAGAGTCGAGTGA
* *
7230 AACAAATATAATTTTAGGTTAAATTCTAAGAATTGTCCTTGAACAAATTGA-TTTGGCCGGAATT
193 AACAAATATAATTTTAGGTTAAATTCTAAGAATAGTCCTTGAACAAATTGATTTTAG-CGGAATT
* *
7294 GGTCCCTCTATTTTT-TTAACTCGTAGCATTCAAGTTGGCCTCTTAAGTTTGAGAAAAATGAAAA
257 GGTACCTCTATTTTTATTAACTCGTAGCATTCAAATTGGCCTCTTAAGTTTGAG---AA--AAAA
* * * * *
7358 ATTTATGAAATCAACGAAGAATCGTGCT-GTCAAATACA-AG-AAGCTCAGTAACATGCAACTAT
317 ATTGATGAAATCAAAGAAGAATC-TCCTAGCCAAATA-AGAGCAA-CTCAATAACATGCAACTAT
* ** * ** * *
7420 CTTGAAACCATTGCTTAAGATTGCAATTTTAAGATAAAAAACAACTTATTATTTTTTACATCAAG
379 ATTGAAACCACCGCGTAAGACGGCAATTTTAAAATAAAAAACAAATTATTATTTTTTACATCAAG
* * * * *
7485 AACGCCT-CGTGTTAGTGTTGCGTGAAACAAATATTA-TTTTAGTTTAAATTCTAAGAATAGTCC
444 AAC-ACTGCGTGTTAGAGTCGAGTGAAACAAATATTATTTTTAGGTTAAATTCTAAGAATAGTCC
* * * *
7548 TTATACTTATAGATTTGCGCATATTTGGTCCCT-TGTTTTTATTTATTCGTAGCACTCAAATTGG
508 TTATACTTATAGATTTGCGCAGATTT-GACCCTATATTTTTATTTACTCGTAGCACTCAAATTGG
* *
7612 CATC-TTAAGTTTGAGAAAAAAAATCGATGAAATCAAAGAAGAATCT-CCTCGCCAAATACAAGC
572 CATCTTTAAGTTGGAG-AAAAAAATCAATGAAATCAAAGAAGAATCTCCCT-GCCAAATACAAGC
* * * * *
7675 AGCTTAGTCAG-ATGGATTTATCTTGAAACCGTTGCGTAAGATGGTAACTTTAAAATAGAAAATA
635 AGCTCAGT-AGCATGCAATTATCTTGAAACCGTCGCGTAAGATGGTAACTTTAAAATAGAAAAGA
7739 AATA-T-TTTTTTATATCAAGAATATTGCGTT-TTAGAGTCGAAAGAAACAAATATTATTTTTGG
699 AATATTCTTTTTTATATCAAGAATATTGC-TTGTTAGAGTCGAAAGAAACAAATATTATTTTTGG
* *
7801 TTAAATTCTAAGAGTAGTCCTTGAATTTTTAAATTTTCATGGATTTGATCCCTCTATTTTTATTT
763 TTAAATTCTAAGAGTAGTCCTTGAATTTATAAATTTGCATGGATTTGATCCCTCTATTTTTATTT
7866 ACTCGTAGCT
828 ACTCGTAGCT
* * *
7876 TTCAAATTGGCGTCTTAAGTTTGAGAAT---AAAAAAAGAAATTTGATGAAATCAAGGAAGAATC
1 TTCAAATTGGTGTCTTAAGTTTGAGAATAAAAAAAAAAGAAAATTGATGAAATCAACGAAGAATC
* * * * * * *
7938 TCCCTGCCAAAAACAAGCAGCTCAATCACATGCAACTATCTTGAAATTGTCGTGTTACATAGCAG
66 TCCTTGCCAAATACAAGCAGCTCAGTCACATGCAAATATCTTGAAATCGCCGTGTTACATAGAAG
*
8003 TTTTAAGATTAAAAAAATT
131 TTTTAAGATAAAAAAAATT
8022 TACAAGCAGC
Statistics
Matches: 845, Mismatches: 118, Indels: 49
0.83 0.12 0.05
Matches are distributed among these distances:
835 100 0.12
837 41 0.05
838 244 0.29
839 9 0.01
840 17 0.02
841 171 0.20
842 163 0.19
843 10 0.01
844 90 0.11
ACGTcount: A:0.36, C:0.14, G:0.16, T:0.35
Consensus pattern (837 bp):
TTCAAATTGGTGTCTTAAGTTTGAGAATAAAAAAAAAAGAAAATTGATGAAATCAACGAAGAATC
TCCTTGCCAAATACAAGCAGCTCAGTCACATGCAAATATCTTGAAATCGCCGTGTTACATAGAAG
TTTTAAGATAAAAAAAATTATTATTTTTTATATCAAGAAAGTCGCGTAATAGAGTCGAGTGAAAC
AAATATAATTTTAGGTTAAATTCTAAGAATAGTCCTTGAACAAATTGATTTTAGCGGAATTGGTA
CCTCTATTTTTATTAACTCGTAGCATTCAAATTGGCCTCTTAAGTTTGAGAAAAAAATTGATGAA
ATCAAAGAAGAATCTCCTAGCCAAATAAGAGCAACTCAATAACATGCAACTATATTGAAACCACC
GCGTAAGACGGCAATTTTAAAATAAAAAACAAATTATTATTTTTTACATCAAGAACACTGCGTGT
TAGAGTCGAGTGAAACAAATATTATTTTTAGGTTAAATTCTAAGAATAGTCCTTATACTTATAGA
TTTGCGCAGATTTGACCCTATATTTTTATTTACTCGTAGCACTCAAATTGGCATCTTTAAGTTGG
AGAAAAAAATCAATGAAATCAAAGAAGAATCTCCCTGCCAAATACAAGCAGCTCAGTAGCATGCA
ATTATCTTGAAACCGTCGCGTAAGATGGTAACTTTAAAATAGAAAAGAAATATTCTTTTTTATAT
CAAGAATATTGCTTGTTAGAGTCGAAAGAAACAAATATTATTTTTGGTTAAATTCTAAGAGTAGT
CCTTGAATTTATAAATTTGCATGGATTTGATCCCTCTATTTTTATTTACTCGTAGCT
Found at i:8033 original size:73 final size:72
Alignment explanation
Indices: 7950--8095 Score: 265
Period size: 73 Copynumber: 2.0 Consensus size: 72
7940 CCTGCCAAAA
*
7950 ACAAGCAGCTCAATCACATGCAACTATCTTGAAATTGTCGTGTTACATAGCAGTTTTAAGATTAA
1 ACAAGCAGCTCAATCACATGCAACTATCTTGAAATTGTCGCGTTACATAGCAGTTTTAAGATT-A
8015 AAAAATTT
65 AAAAATTT
*
8023 ACAAGCAGCTCAATCACATGCAACTATCTTGAAATTGTCGCGTTACATAGTAGTTTTAAGATTAA
1 ACAAGCAGCTCAATCACATGCAACTATCTTGAAATTGTCGCGTTACATAGCAGTTTTAAGATTAA
8088 AAAATTT
66 AAAATTT
8095 A
1 A
8096 TTATTTTTTT
Statistics
Matches: 71, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
72 10 0.14
73 61 0.86
ACGTcount: A:0.38, C:0.16, G:0.14, T:0.32
Consensus pattern (72 bp):
ACAAGCAGCTCAATCACATGCAACTATCTTGAAATTGTCGCGTTACATAGCAGTTTTAAGATTAA
AAAATTT
Found at i:14799 original size:278 final size:277
Alignment explanation
Indices: 13665--14844 Score: 1268
Period size: 278 Copynumber: 4.2 Consensus size: 277
13655 ATAATTCAAT
* * * *
13665 TTTTTATTTACTTGTAGCATTGAAATTGGC-CCTTTAAGTTTGAG-AAAAAACAAAATAGATGAA
1 TTTTTATTTACTCGTAGCATTCAAATTGGCAAC-TTAACTTTGAGAAAAAAACAAAATAGATGAA
* * * ***
13728 AACAAAAAAGAATCTCC--ACGTCAAATACAAGCAGCTCCGTCACATGCATTTAACTTGAAAATG
65 ATCAAAGAAGAATCTCCTTAC--CAAATACAAGCAGCTCAGTCACATGCATTTAACTTGAAACCA
* * *
13791 TCGCGTAAGATGGCAGTTTTAAAATAAAAGAGAAAATATTTTTTTATATCAAG-AACGTCGCGTG
128 CCACGTAAGATGGCAGTTTTAAAATAAAAGAGAAAATA-TTTTTTATATCAAGAAAC--CACGTG
*
13855 TCAGAATCCAAAGAAACAAATATTACTTTAGTTTAAATTTTAAGAATAGTCCTTGTACTTGTTGA
190 TCAGAATCCAAAGAAACAAATATTACTTTAGCTTAAATTTTAAGAATAGTCCTTGTACTTGTTGA
13920 TTTGTGCAGATTTGGTCCCACTA
255 TTTGTGCAGATTTGGTCCCACTA
* * * * * *
13943 TTTTTATTTACTCATAGCAGTCAAATTGGCAACTTATCTTTGACAAAAAAAAAAAATTTGATGAA
1 TTTTTATTTACTCGTAGCATTCAAATTGGCAACTTAACTTTGAGAAAAAAACAAAA-TAGATGAA
* * * * *
14008 ATCAACGAAGAATCTCCTTGCCAAATACAAG-AGCTCAATCACACGCATTTAACTTGAAACCGCC
65 ATCAAAGAAGAATCTCCTTACCAAATACAAGCAGCTCAGTCACATGCATTTAACTTGAAACCACC
* * * **
14072 ACGTAAGATGGCTGTTTTAAAATAAAAGAGAAATTTTTTTTTTATATCAAG-AACGTTGCGTGTC
130 ACGTAAGATGGCAGTTTTAAAATAAAAGAGAAA-ATATTTTTTATATCAAGAAAC--CACGTGTC
* * *
14136 AGAATCCAAAGAAACAAATATTATTTTAGCTTAAATTTTAAGAGTAGTCCTTGCACTTGTTGATT
192 AGAATCCAAAGAAACAAATATTACTTTAGCTTAAATTTTAAGAATAGTCCTTGTACTTGTTGATT
*
14201 TGTGCGGATTTGGTCCCACTA
257 TGTGCAGATTTGGTCCCACTA
* *
14222 -TTTTATTTACTCGTAGCATTCAAATTGGCAACTTATCTTTGACAAANNNNNNNNNNNNNAAAAA
1 TTTTTATTTACTCGTAGCATTCAAATTGGCAACTTAACTTTGA-GAA-------------AAAAA
* * * ** * ** *
14286 GAAAATTGATGAAATCAACGAAGAATCTCCCAACCAAATACAAGCAGCTTAGTCACATTAAATTA
52 CAAAATAGATGAAATCAAAGAAGAATCTCCTTACCAAATACAAGCAGCTCAGTCACATGCATTTA
* * * * ** * * *
14351 TA-TTGAAACGACCGCATTAGATGGCAGTTTTAGGATAAAAAAGAATTTATTATTTTTTATATTA
117 -ACTTGAAACCACCACGTAAGATGGCAGTTTTAAAATAAAAGAGAA---AATATTTTTTATATCA
* * *
14415 A-AAACGTCACGTGTCA-AAGT-CAAGTGAAACAAATACTATTTTAGCTTAAATTTTAAGAATAG
178 AGAAAC--CACGTGTCAGAA-TCCAA-AGAAACAAATATTACTTTAGCTTAAATTTTAAGAATAG
* * * * *
14477 TCCTTGTACTTCTTGATTTGCGCAGATTTTGTCCCTCAA
239 TCCTTGTACTTGTTGATTTGTGCAGATTTGGTCCCACTA
* ** *
14516 TTTTTATTTACTCGTAGCATTGAAATTGGCCTCTTAAATTTGAGAAAAAAACAAAATAGATGAAA
1 TTTTTATTTACTCGTAGCATTCAAATTGGCAACTTAACTTTGAGAAAAAAACAAAATAGATGAAA
* * * *
14581 TCAAAGAAGAATCACCTTACCGAATACAAGCAGCTCGGTCACATGCATTTAACTTGAAACCACTA
66 TCAAAGAAGAATCTCCTTACCAAATACAAGCAGCTCAGTCACATGCATTTAACTTGAAACCACCA
* * *
14646 CGTAAGATGGCAATTTTAAAATAAAAGAGAAAATATTTTTTATATCAAGAATACCATGTGTCAGG
131 CGTAAGATGGCAGTTTTAAAATAAAAGAGAAAATATTTTTTATATCAAGAA-ACCACGTGTCAGA
*
14711 ATCCAAAGAAACAAATATTACTTTAGCTTAAATATTAAGAATAGTCCTTGTACTTGTTGATTTGT
195 ATCCAAAGAAACAAATATTACTTTAGCTTAAATTTTAAGAATAGTCCTTGTACTTGTTGATTTGT
* *
14776 GCGGATTTGGTTCCACTA
260 GCAGATTTGGTCCCACTA
***
14794 TTTTTATTTACTCGTAGCATTCAAATTGGTGTCTTAACTTTGAGAAAAAAA
1 TTTTTATTTACTCGTAGCATTCAAATTGGCAACTTAACTTTGAGAAAAAAA
14845 AAAGAAAATT
Statistics
Matches: 756, Mismatches: 112, Indels: 68
0.81 0.12 0.07
Matches are distributed among these distances:
278 211 0.28
279 184 0.24
280 35 0.05
281 92 0.12
282 1 0.00
291 36 0.05
292 57 0.08
293 6 0.01
294 96 0.13
295 38 0.05
ACGTcount: A:0.37, C:0.15, G:0.15, T:0.32
Consensus pattern (277 bp):
TTTTTATTTACTCGTAGCATTCAAATTGGCAACTTAACTTTGAGAAAAAAACAAAATAGATGAAA
TCAAAGAAGAATCTCCTTACCAAATACAAGCAGCTCAGTCACATGCATTTAACTTGAAACCACCA
CGTAAGATGGCAGTTTTAAAATAAAAGAGAAAATATTTTTTATATCAAGAAACCACGTGTCAGAA
TCCAAAGAAACAAATATTACTTTAGCTTAAATTTTAAGAATAGTCCTTGTACTTGTTGATTTGTG
CAGATTTGGTCCCACTA
Done.