Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01004194.1 Kokia drynarioides strain JFW-HI SEQ_117428, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 862

Length: 1438
ACGTcount: A:0.31, C:0.19, G:0.16, T:0.34


Found at i:615 original size:24 final size:24

Alignment explanation


    Indices: 581--627  Score: 69
    Period size: 24  Copynumber: 2.0  Consensus size: 24

        571 ATTAATCTTT

                       *            
        581 TATTAATTTGCTCTGAC-ATTTTA
          1 TATTAATTTGCACTGACAATTTTA

                                    
        604 TATTACATTTGCACTGACAATTTT
          1 TATTA-ATTTGCACTGACAATTTT

        628 TACTCTTAAC


Statistics
Matches: 21,  Mismatches: 1, Indels: 2
        0.88            0.04        0.08

Matches are distributed among these distances:
  23    5  0.24
  24   11  0.52
  25    5  0.24

ACGTcount: A:0.28, C:0.15, G:0.09, T:0.49


Consensus pattern (24 bp):   
TATTAATTTGCACTGACAATTTTA
Done.