Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01000042.1 Kokia drynarioides strain JFW-HI SEQ_80631, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3065
ACGTcount: A:0.35, C:0.14, G:0.16, T:0.35


Found at i:158 original size:15 final size:15

Alignment explanation


    Indices: 138--185  Score: 87
    Period size: 15  Copynumber: 3.2  Consensus size: 15

        128 GTGAAGAATT

                       *   
        138 TGTTGGATATATGTG
          1 TGTTGGATATAAGTG

                           
        153 TGTTGGATATAAGTG
          1 TGTTGGATATAAGTG

                           
        168 TGTTGGATATAAGTG
          1 TGTTGGATATAAGTG

               
        183 TGT
          1 TGT

        186 GTGTGCATAC


Statistics
Matches: 32,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  15   32  1.00

ACGTcount: A:0.23, C:0.00, G:0.33, T:0.44


Consensus pattern (15 bp):   
TGTTGGATATAAGTG

Found at i:201 original size:2 final size:2

Alignment explanation


    Indices: 196--233  Score: 67
    Period size: 2  Copynumber: 19.0  Consensus size: 2

        186 GTGTGCATAC

                                                            *       
        196 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT GT AT AT
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT

        234 GATGTGTGTT


Statistics
Matches: 34,  Mismatches: 2, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
   2   34  1.00

ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50


Consensus pattern (2 bp):   
AT

Done.