Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01004200.1 Kokia drynarioides strain JFW-HI SEQ_117441, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 10498
ACGTcount: A:0.33, C:0.15, G:0.17, T:0.36


Found at i:4150 original size:12 final size:12

Alignment explanation


    Indices: 4116--4158  Score: 59
    Period size: 12  Copynumber: 3.6  Consensus size: 12

       4106 CCAGCCTACG

                      * 
       4116 ATGTATATATAT
          1 ATGTATATATGT

              *         
       4128 ATATATATATGT
          1 ATGTATATATGT

                  *     
       4140 ATGTATGTATGT
          1 ATGTATATATGT

                   
       4152 ATGTATA
          1 ATGTATA

       4159 GGTGTATATA


Statistics
Matches: 26,  Mismatches: 5, Indels: 0
        0.84            0.16        0.00

Matches are distributed among these distances:
  12   26  1.00

ACGTcount: A:0.37, C:0.00, G:0.14, T:0.49


Consensus pattern (12 bp):   
ATGTATATATGT
Done.