Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01004203.1 Kokia drynarioides strain JFW-HI SEQ_117448, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4304
ACGTcount: A:0.36, C:0.14, G:0.15, T:0.34


Found at i:2242 original size:24 final size:24

Alignment explanation


    Indices: 2215--2263  Score: 64
    Period size: 24  Copynumber: 2.0  Consensus size: 24

       2205 ATGTAAATTA

                                     
       2215 ATTATT-TTATTAATAAATTCATCC
          1 ATTATTATTATTAA-AAATTCATCC

                     *         *    
       2239 ATTATTATTGTTAAAAATTGATCC
          1 ATTATTATTATTAAAAATTCATCC

             
       2263 A
          1 A

       2264 AGTAATCAAC


Statistics
Matches: 22,  Mismatches: 2, Indels: 2
        0.85            0.08        0.08

Matches are distributed among these distances:
  24   16  0.73
  25    6  0.27

ACGTcount: A:0.39, C:0.10, G:0.04, T:0.47


Consensus pattern (24 bp):   
ATTATTATTATTAAAAATTCATCC
Done.