Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01004204.1 Kokia drynarioides strain JFW-HI SEQ_117449, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2119
ACGTcount: A:0.29, C:0.21, G:0.20, T:0.29


Found at i:471 original size:21 final size:21

Alignment explanation


    Indices: 445--485  Score: 57
    Period size: 21  Copynumber: 2.0  Consensus size: 21

        435 TCATCGCGAT

                  *               
        445 ACTCTATTCCTCTCAG-GCAAG
          1 ACTCTACTCCTC-CAGAGCAAG

                                
        466 ACTCTACTCCTCCAGAGCAA
          1 ACTCTACTCCTCCAGAGCAA

        486 ACAGACCCTA


Statistics
Matches: 18,  Mismatches: 1, Indels: 2
        0.86            0.05        0.10

Matches are distributed among these distances:
  20    3  0.17
  21   15  0.83

ACGTcount: A:0.27, C:0.37, G:0.12, T:0.24


Consensus pattern (21 bp):   
ACTCTACTCCTCCAGAGCAAG
Done.