Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01004205.1 Kokia drynarioides strain JFW-HI SEQ_117451, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3308
ACGTcount: A:0.34, C:0.17, G:0.18, T:0.31


Found at i:2350 original size:26 final size:26

Alignment explanation


    Indices: 2321--2372  Score: 104
    Period size: 26  Copynumber: 2.0  Consensus size: 26

       2311 TTAATTACCA

                                      
       2321 ACTCAACTTGTTTTTCCAACTGCTAC
          1 ACTCAACTTGTTTTTCCAACTGCTAC

                                      
       2347 ACTCAACTTGTTTTTCCAACTGCTAC
          1 ACTCAACTTGTTTTTCCAACTGCTAC

       2373 GGAGTTGCTG


Statistics
Matches: 26,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  26   26  1.00

ACGTcount: A:0.23, C:0.31, G:0.08, T:0.38


Consensus pattern (26 bp):   
ACTCAACTTGTTTTTCCAACTGCTAC
Done.