Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01004210.1 Kokia drynarioides strain JFW-HI SEQ_117457, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5383
ACGTcount: A:0.35, C:0.10, G:0.19, T:0.36


Found at i:912 original size:43 final size:43

Alignment explanation


    Indices: 847--989  Score: 162
    Period size: 43  Copynumber: 3.3  Consensus size: 43

        837 ATCACTTGGC

                           * *                         
        847 ATAAATGGAAGACTCATGTCTCGGGATTAGCATGAGATTATGT
          1 ATAAATGGAAGACTCTTATCTCGGGATTAGCATGAGATTATGT

                        *             *               *
        890 ATAAATGGAAGAGTCTTATCTCGGGACTAGCATGAGATTATGC
          1 ATAAATGGAAGACTCTTATCTCGGGATTAGCATGAGATTATGT

                        *    *    * **  *    *          
        933 ATAAATGGAAGATTCGTGA-CTTGAAATGAGCAAGAGATTATGT
          1 ATAAATGGAAGACTC-TTATCTCGGGATTAGCATGAGATTATGT

                          
        976 ATAAATGGAAGACT
          1 ATAAATGGAAGACT

        990 TTCATATTGC


Statistics
Matches: 84,  Mismatches: 15, Indels: 2
        0.83            0.15        0.02

Matches are distributed among these distances:
  43   82  0.98
  44    2  0.02

ACGTcount: A:0.36, C:0.10, G:0.25, T:0.28


Consensus pattern (43 bp):   
ATAAATGGAAGACTCTTATCTCGGGATTAGCATGAGATTATGT
Done.