genome.fa.s4211.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01004211.1 Kokia drynarioides strain JFW-HI SEQ_117458, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  36845

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
573--604	16	2.0	16	93	0	55	25	18	3	53	1.59
1576--1964	197	2.0	196	81	5	455	40	14	18	26	1.89
1768--3028	216	5.9	215	84	5	1469	40	14	17	28	1.88
1768--3027	431	2.9	426	83	5	1518	40	14	17	28	1.88
1768--3027	215	5.8	216	84	5	1478	40	14	17	28	1.88
3328--3458	48	2.8	48	91	1	201	25	9	12	52	1.69
3330--3473	48	3.0	46	85	8	150	26	9	13	50	1.72
3903--4058	80	2.0	79	91	2	251	35	23	14	26	1.94
8905--9031	48	2.7	48	91	2	195	23	8	14	53	1.68
9481--9637	80	2.0	79	91	1	251	35	22	15	26	1.94
10163--10756	195	2.9	201	82	9	706	40	13	18	28	1.88
10358--10818	217	2.1	217	85	4	610	41	13	16	27	1.86
10908--11063	30	5.2	30	82	0	177	31	26	19	21	1.98
10935--11016	15	5.5	15	72	16	71	32	28	17	21	1.96
10908--11075	90	1.9	90	85	0	237	31	27	19	21	1.97
12642--12714	30	2.4	30	97	0	137	34	9	13	42	1.77
20835--20986	50	3.0	50	80	6	162	38	13	15	32	1.86
25760--25799	21	2.0	20	85	14	55	47	17	10	25	1.78
25224--25873	216	3.0	215	85	3	878	41	14	15	28	1.86
25754--25994	123	2.0	123	87	0	347	40	14	16	28	1.88
25540--26180	331	1.9	331	86	5	923	40	15	16	27	1.88
25877--28169	216	10.6	215	83	5	2556	40	14	17	27	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26281--26738	239	1.9	239	86	2	652	40	15	17	26	1.89
25877--28169	863	2.6	868	84	4	2878	40	14	17	27	1.89
28057--28095	20	1.9	21	89	5	62	46	17	12	23	1.83
28051--28292	123	2.0	123	83	0	304	39	13	18	28	1.88
30447--30589	71	1.9	73	87	8	209	50	10	13	25	1.74

Tables:   1

The End!