genome.fa.s4215.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01004215.1 Kokia drynarioides strain JFW-HI SEQ_117464, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  159228

Tables:   1   

This is table  1  of  1  ( 49 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7909--7945	18	2.1	18	94	0	65	18	16	10	54	1.71
8410--8738	49	6.7	48	68	16	174	38	17	25	17	1.92
8368--8738	98	3.8	98	85	1	440	40	17	25	17	1.91
8368--8738	196	1.9	197	83	2	487	40	17	25	17	1.91
10808--10835	13	2.2	13	100	0	56	25	14	0	60	1.34
25495--25680	93	2.0	93	100	0	372	47	9	21	21	1.79
30529--30568	18	2.1	20	90	9	66	72	10	0	17	1.11
35961--35995	18	1.9	18	94	0	61	80	5	11	2	1.00
37743--37839	47	2.1	47	96	0	176	31	21	12	34	1.91
40601--40652	20	2.7	19	81	3	68	40	15	5	38	1.71
40680--40741	19	3.2	19	80	13	72	45	8	6	40	1.59
42857--42904	22	2.2	22	85	3	62	29	2	4	64	1.23
44540--44589	22	2.3	22	82	6	66	30	18	16	36	1.92
47432--47484	20	2.6	21	85	11	67	30	1	0	67	1.01
51128--51164	14	2.5	15	86	8	58	2	16	5	75	1.10
53020--53062	11	3.8	11	82	14	52	55	0	2	41	1.12
55818--55867	25	1.9	27	88	8	77	46	0	0	54	1.00
82036--82099	21	3.0	21	86	0	83	32	10	23	32	1.89
83752--83949	99	2.0	99	97	0	378	25	23	22	27	2.00
85647--85927	140	2.0	139	96	0	517	30	11	14	44	1.79
95713--95759	23	2.0	24	91	4	78	42	0	0	57	0.98
95699--95743	17	2.7	16	80	10	54	40	0	2	57	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
95704--95788	20	4.3	19	79	17	84	38	0	1	60	1.05
97362--97398	18	2.1	18	94	0	65	37	16	13	32	1.87
97419--97468	15	3.3	15	88	2	64	54	0	4	42	1.19
101217--101287	30	2.4	31	79	9	85	38	4	8	49	1.53
101271--101339	23	3.0	22	72	19	59	42	0	10	47	1.37
101441--101479	20	2.0	20	94	0	69	51	2	0	46	1.14
101442--101495	20	2.8	20	86	5	67	55	3	0	40	1.17
101522--101587	9	7.0	9	78	10	53	60	3	1	34	1.21
102414--102472	27	2.2	26	80	14	66	67	3	5	23	1.26
104203--104554	173	2.0	174	98	0	679	39	4	20	35	1.73
105946--106185	52	4.6	52	87	3	340	26	14	22	35	1.93
120265--120314	20	2.4	21	81	15	52	42	10	0	48	1.37
125250--125487	52	4.6	52	88	2	336	25	15	23	35	1.94
126264--126316	21	2.6	19	80	16	61	18	13	26	41	1.87
127840--127922	42	2.0	42	90	0	130	34	4	10	49	1.59
127840--127911	21	3.4	22	70	22	64	36	4	12	47	1.61
127863--127922	21	2.8	20	71	24	52	35	3	8	53	1.48
133025--133090	22	3.0	21	70	12	60	37	1	9	51	1.43
133335--133375	22	2.0	21	86	13	59	70	2	0	26	0.99
144372--144774	98	4.1	98	81	0	439	36	15	26	21	1.93
144372--144798	49	8.7	49	77	3	302	35	16	26	21	1.94
145016--145333	38	8.2	39	72	10	215	33	26	16	24	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
145016--145333	77	4.1	78	88	4	473	33	26	16	24	1.95
145016--145333	155	2.1	155	90	1	494	33	26	16	24	1.95
145270--145493	46	5.1	45	77	10	171	34	24	16	24	1.95
147199--147284	29	2.9	31	81	6	97	31	23	4	40	1.75
153637--153691	26	2.2	26	81	9	71	25	5	0	69	1.10

Tables:   1

The End!