Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01004218.1 Kokia drynarioides strain JFW-HI SEQ_117469, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4284
ACGTcount: A:0.25, C:0.16, G:0.21, T:0.38


Found at i:215 original size:39 final size:39

Alignment explanation


    Indices: 161--240  Score: 160
    Period size: 39  Copynumber: 2.1  Consensus size: 39

        151 TAGCTGCGAG

                                                   
        161 TTAGTGCTTGCAAAATCCTCATTAACTAATTTCACAATT
          1 TTAGTGCTTGCAAAATCCTCATTAACTAATTTCACAATT

                                                   
        200 TTAGTGCTTGCAAAATCCTCATTAACTAATTTCACAATT
          1 TTAGTGCTTGCAAAATCCTCATTAACTAATTTCACAATT

              
        239 TT
          1 TT

        241 CTTTTGGTGA


Statistics
Matches: 41,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  39   41  1.00

ACGTcount: A:0.33, C:0.20, G:0.07, T:0.40


Consensus pattern (39 bp):   
TTAGTGCTTGCAAAATCCTCATTAACTAATTTCACAATT

Found at i:299 original size:24 final size:24

Alignment explanation


    Indices: 272--319  Score: 96
    Period size: 24  Copynumber: 2.0  Consensus size: 24

        262 ATTTAGTCTT

                                    
        272 TGTTACAGAATCATAGGCTGATAG
          1 TGTTACAGAATCATAGGCTGATAG

                                    
        296 TGTTACAGAATCATAGGCTGATAG
          1 TGTTACAGAATCATAGGCTGATAG

        320 GCTAATTAAT


Statistics
Matches: 24,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  24   24  1.00

ACGTcount: A:0.33, C:0.12, G:0.25, T:0.29


Consensus pattern (24 bp):   
TGTTACAGAATCATAGGCTGATAG
Done.