Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01000422.1 Kokia drynarioides strain JFW-HI SEQ_111251, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3879
ACGTcount: A:0.34, C:0.17, G:0.17, T:0.32


Found at i:808 original size:86 final size:86

Alignment explanation


    Indices: 663--835  Score: 337
    Period size: 86  Copynumber: 2.0  Consensus size: 86

        653 AACTCACATT

                                                                             
        663 ACTTTAGCTTCAAAATTACATTGGTCAATGACTTAGTATGAAAAGGTGTTATAGACTAGTATGTA
          1 ACTTTAGCTTCAAAATTACATTGGTCAATGACTTAGTATGAAAAGGTGTTATAGACTAGTATGTA

                                 
        728 TAATTGCAATCTGTAGTCACA
         66 TAATTGCAATCTGTAGTCACA

                                                                             
        749 ACTTTAGCTTCAAAATTACATTGGTCAATGACTTAGTATGAAAAGGTGTTATAGACTAGTATGTA
          1 ACTTTAGCTTCAAAATTACATTGGTCAATGACTTAGTATGAAAAGGTGTTATAGACTAGTATGTA

                        *        
        814 TAATTGCAATCTTTAGTCACA
         66 TAATTGCAATCTGTAGTCACA

             
        835 A
          1 A

        836 TAAAATTGGA


Statistics
Matches: 86,  Mismatches: 1, Indels: 0
        0.99            0.01        0.00

Matches are distributed among these distances:
  86   86  1.00

ACGTcount: A:0.35, C:0.13, G:0.17, T:0.35


Consensus pattern (86 bp):   
ACTTTAGCTTCAAAATTACATTGGTCAATGACTTAGTATGAAAAGGTGTTATAGACTAGTATGTA
TAATTGCAATCTGTAGTCACA
Done.