Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01004220.1 Kokia drynarioides strain JFW-HI SEQ_117473, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2220
ACGTcount: A:0.38, C:0.12, G:0.15, T:0.35


Found at i:1892 original size:24 final size:23

Alignment explanation


    Indices: 1855--1902  Score: 60
    Period size: 24  Copynumber: 2.0  Consensus size: 23

       1845 ATTGAATCGA

                          *        
       1855 TTTTTCTCTATTTTGTAAATATT
          1 TTTTTCTCTATTTTATAAATATT

                 *           *      
       1878 TTTTTTTCTATTTTTATGAATATT
          1 TTTTTCTCTA-TTTTATAAATATT

             
       1902 T
          1 T

       1903 AATAATTTAG


Statistics
Matches: 21,  Mismatches: 3, Indels: 1
        0.84            0.12        0.04

Matches are distributed among these distances:
  23    9  0.43
  24   12  0.57

ACGTcount: A:0.21, C:0.06, G:0.04, T:0.69


Consensus pattern (23 bp):   
TTTTTCTCTATTTTATAAATATT
Done.