Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01004221.1 Kokia drynarioides strain JFW-HI SEQ_117477, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 9127
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.34


Found at i:2390 original size:38 final size:37

Alignment explanation


    Indices: 2338--2442  Score: 113
    Period size: 38  Copynumber: 2.8  Consensus size: 37

       2328 AATACATTTG

                    **                             
       2338 GCGAGCAGTTAATACATTTGTTGAGCTCATCAAGATTCA
          1 GCGAGCAGCGAATACATTTG-TGAGCTCATCAAGATT-A

                                  *               
       2377 -CGAGCAGCGAATACATTTAGTAAGCTCATCAAGATTA
          1 GCGAGCAGCGAATACATTT-GTGAGCTCATCAAGATTA

             *          *        *       
       2414 GAGAGCAGCGAACACATTTGACGAGCTCA
          1 GCGAGCAGCGAATACATTTG-TGAGCTCA

       2443 CATAAAGTGG


Statistics
Matches: 56,  Mismatches: 7, Indels: 7
        0.80            0.10        0.10

Matches are distributed among these distances:
  37    2  0.04
  38   53  0.95
  39    1  0.02

ACGTcount: A:0.34, C:0.20, G:0.22, T:0.24


Consensus pattern (37 bp):   
GCGAGCAGCGAATACATTTGTGAGCTCATCAAGATTA
Done.